Enzyme Kinetics and Inhibition

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Questions and Answers

What does Kcat represent in enzyme kinetics?

  • The maximum rate at which an enzyme can convert substrate to product
  • The affinity of an enzyme for its substrate
  • The concentration of free enzyme at steady state
  • The rate of ES complex formation per unit time (correct)

What is indicated by the term 'steady state' in enzyme kinetics?

  • The rate of formation and breakdown of the ES complex balances out (correct)
  • The concentration of the substrate remains constant over time
  • The enzyme concentration varies throughout the reaction
  • The substrate is fully consumed by the enzyme

Which assumption must be met for Michaelis-Menten kinetics to apply?

  • The enzyme concentration needs to be greater than the substrate concentration
  • The reaction reaches its final product before measuring initial rates
  • The enzyme concentration must be less than the substrate concentration (correct)
  • All substrate must bind to the enzyme simultaneously

What does the term Km measure in the context of enzyme kinetics?

<p>The affinity of the enzyme for its substrate (B)</p> Signup and view all the answers

How is Vmax affected in enzymatic reactions?

<p>It depends on the concentration of the enzyme (B)</p> Signup and view all the answers

What is the Vmax for the uninhibited enzyme as given?

<p>25 mM/s (A)</p> Signup and view all the answers

What is the value of Km for the uninhibited enzyme?

<p>0.09 mg/mL (A)</p> Signup and view all the answers

If 10 nmol of enzyme is used in a 100 μL reaction, which formula helps in calculating kcat?

<p>kcat = Vmax / [E] (B)</p> Signup and view all the answers

In the provided content, what is the reaction volume stated for the enzyme activity?

<p>100 μL (A)</p> Signup and view all the answers

What is the first step to find kcat as mentioned in the content?

<p>Calculate Umax (B)</p> Signup and view all the answers

How is Km represented in the context provided?

<p>The substrate concentration at half Vmax (A)</p> Signup and view all the answers

What unit is used to express the Vmax in the provided content?

<p>mM/s (B)</p> Signup and view all the answers

What is the concentration of the enzyme in the solution if 10 nmol of enzyme is used in a 100 μL reaction?

<p>1 μM (B)</p> Signup and view all the answers

What process do proteases use to cleave proteins?

<p>Hydrolysis (B)</p> Signup and view all the answers

Which of the following best describes hydrolysis in the context of proteases?

<p>Exergonic and energy-releasing (C)</p> Signup and view all the answers

What is a key characteristic of the catalytic trend in serine proteases?

<p>They cleave peptide bonds through acylation-deacylation (C)</p> Signup and view all the answers

What are the primary roles of nucleophiles and electrophiles during the reaction with proteases?

<p>Nucleophiles attack electrophiles to facilitate bond cleavage (D)</p> Signup and view all the answers

Which amino acid residues are commonly involved in the catalytic mechanism of serine proteases?

<p>Asp-His-Ser (A)</p> Signup and view all the answers

What type of kinetics is exhibited by chymotrypsin?

<p>Biphasic Kinetics (B)</p> Signup and view all the answers

What is the effect of a catalyst on the rate of a reaction involving hydrolysis by proteases?

<p>Accelerates the reaction rate (A)</p> Signup and view all the answers

In the context of proteolysis, what does the term 'acyl-enzyme' refer to?

<p>A transient intermediate in the reaction (D)</p> Signup and view all the answers

What does the variable kat represent in the context provided?

<p>Rate of turnover (C)</p> Signup and view all the answers

What is the unit for the slope calculated in the content?

<p>nm/min (B)</p> Signup and view all the answers

At what concentration is Kat calculated to be 60,600 min?

<p>6.06 x 10^-3 M (D)</p> Signup and view all the answers

What does Vmax represent in the equations provided?

<p>Maximum turnover rate (A)</p> Signup and view all the answers

What is the relation of kat to [C]T and [E]T in the equation for Vmax?

<p>Vmax = kat * [E]T (A)</p> Signup and view all the answers

How is specificity constant calculated according to the given information?

<p>kat divided by [C] (D)</p> Signup and view all the answers

What does the term 0.0606 x 10^-3 M/m denote?

<p>Kat value (A)</p> Signup and view all the answers

Which of the following denotes a concentration conversion mentioned in the content?

<p>1 mm = 10^3 nm (A)</p> Signup and view all the answers

What happens to enzyme activity when temperature increases?

<p>Enzyme activity initially increases and then stabilizes. (C)</p> Signup and view all the answers

What is the effect of competitive inhibitors on enzyme activity?

<p>They bind to the active site, preventing substrate binding. (D)</p> Signup and view all the answers

What is the effect of uncompetitive inhibitors on Km and Vmax?

<p>Both Km and Vmax decrease. (B)</p> Signup and view all the answers

Which type of inhibitor binds equally to the enzyme regardless of substrate presence?

<p>Noncompetitive inhibitor (D)</p> Signup and view all the answers

What is observed in a double-reciprocal plot when a competitive inhibitor is present?

<p>The slope increases while the y-intercept remains the same. (D)</p> Signup and view all the answers

What is the effect of noncompetitive inhibitors on Vmax?

<p>Vmax decreases but Km remains unchanged. (C)</p> Signup and view all the answers

How do irreversible inhibitors typically affect enzymes?

<p>They permanently attach to the enzyme. (C)</p> Signup and view all the answers

What is the typical impact of a competitive inhibitor on the Km value?

<p>Km increases. (B)</p> Signup and view all the answers

What characteristic is unique to uncompetitive inhibitors compared to competitive inhibitors?

<p>They decrease both Km and Vmax. (D)</p> Signup and view all the answers

What does a higher Km value indicate about an enzyme's affinity for a substrate?

<p>Lower affinity for the substrate. (D)</p> Signup and view all the answers

Which type of inhibition occurs when an inhibitor binds to a site other than the active site?

<p>Noncompetitive inhibition (C)</p> Signup and view all the answers

What changes occur in the presence of a competitive inhibitor according to the Michaelis-Menten kinetics?

<p>Km increases while Vmax remains constant. (C)</p> Signup and view all the answers

What is indicated by a decrease in Vmax when an enzyme is inhibited?

<p>The enzyme's overall activity has decreased. (D)</p> Signup and view all the answers

Which of the following describes the behavior of noncompetitive inhibitors?

<p>They do not affect substrate binding. (A)</p> Signup and view all the answers

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Study Notes

Uninhibited Enzyme

  • The uninhibited enzyme's Vmax is 25 mM/s.
  • The uninhibited enzyme's Km is 0.09 mg/mL.

Kcat Calculation

  • The enzyme concentration is 10 nmol in a 100 μL reaction.
  • The Kcat is calculated using the formula: Kcat = Vmax / [ET].
  • The Kcat is 60,600 min.

Enzyme Kinetics

  • Km is a measure of substrate affinity, representing the substrate's binding to the enzyme.
  • Vmax is a measure of enzyme rate, dependent on enzyme concentration.

Enzyme Activity and Temperature

  • Increased temperature initially increases enzyme rate, as it increases the stability of the protein/enzyme.

Enzyme Activity and Protonation/Deprotonation

  • Enzyme activity depends on the protonation/deprotonation of specific groups, which can activate or deactivate the enzyme.

Inhibitors

  • Competitive inhibitors bind to the active site, preventing substrate binding.
  • Uncompetitive inhibitors bind to the enzyme-substrate complex, preventing product formation.
  • Noncompetitive inhibitors bind to an allosteric site, affecting enzyme conformation and activity.

Double-Reciprocal Plot

  • Double-reciprocal plots (Lineweaver-Burk plots) are used to represent enzyme kinetic data linearly.
  • Competitive, uncompetitive, and noncompetitive inhibition can be distinguished by analyzing the changes in slope and y-intercept of the plot.

Irreversible Inhibitors

  • Irreversible inhibitors typically form a covalent bond with the enzyme, permanently inactivating it.

Protease Kinetics

  • Proteases cleave proteins by hydrolysis.
  • Chymotrypsin demonstrates biphasic kinetics due to its acylation-deacylation mechanism.

Serine Protease Kinetics

  • Serine proteases have an Asp-His-Ser catalytic triad.
  • Kinetics follow a specific rate equation with specific Km and Vmax values.
  • The Kcat for serine protease is 60,600 min.
  • Specificity constant (Kcat/Km) is a measure of the enzyme's preference for a particular substrate.

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