Podcast
Questions and Answers
What is the typical size of a bacterial chromosome?
What is the typical size of a bacterial chromosome?
- 4,000,000 bp (correct)
- 8,000,000 bp
- 2,000,000 bp
- 6,000,000 bp
How many base pairs must a bacterium replicate per minute to keep up with its division rate?
How many base pairs must a bacterium replicate per minute to keep up with its division rate?
- 200,000 bp (correct)
- 100,000 bp
- 250,000 bp
- 150,000 bp
What process was shown by the Meselson-Stahl experiment?
What process was shown by the Meselson-Stahl experiment?
- Semiconservative replication (correct)
- Lagging strand replication
- Dispersive replication
- Conservative replication
What was used in the medium to label the DNA in the Meselson-Stahl experiment?
What was used in the medium to label the DNA in the Meselson-Stahl experiment?
What method was used to distinguish between 15N-DNA and 14N-DNA?
What method was used to distinguish between 15N-DNA and 14N-DNA?
At what rate must the DNA molecule rotate during replication in a bacterium?
At what rate must the DNA molecule rotate during replication in a bacterium?
Which isotope of nitrogen was used in the experimentation to mark DNA?
Which isotope of nitrogen was used in the experimentation to mark DNA?
How often can a bacterium divide under the conditions described?
How often can a bacterium divide under the conditions described?
What is the primary purpose of DNA replication?
What is the primary purpose of DNA replication?
What type of replication produces two identical DNA strands, each containing one original strand?
What type of replication produces two identical DNA strands, each containing one original strand?
Which enzymes are critical for resolving the unwinding of the DNA double helix during replication?
Which enzymes are critical for resolving the unwinding of the DNA double helix during replication?
Why was semiconservative replication initially thought to be impossible?
Why was semiconservative replication initially thought to be impossible?
What misconception about DNA replication was common in the 1950s?
What misconception about DNA replication was common in the 1950s?
In which types of DNA structure is unwinding particularly problematic during replication?
In which types of DNA structure is unwinding particularly problematic during replication?
What was the widely accepted theory of DNA replication before semiconservative replication was established?
What was the widely accepted theory of DNA replication before semiconservative replication was established?
What is one consequence of defects in DNA replication?
What is one consequence of defects in DNA replication?
What is the primary function of DNA topoisomerases during DNA replication?
What is the primary function of DNA topoisomerases during DNA replication?
Which segment of DNA is completely cut by a Type II DNA topoisomerase?
Which segment of DNA is completely cut by a Type II DNA topoisomerase?
How does a Type I DNA topoisomerase function during DNA replication?
How does a Type I DNA topoisomerase function during DNA replication?
What is the role of the T Segment in the action of Type II DNA topoisomerase?
What is the role of the T Segment in the action of Type II DNA topoisomerase?
What type of supercoiling occurs when DNA strands are separated?
What type of supercoiling occurs when DNA strands are separated?
Which one of the following describes the main action of Type II DNA topoisomerases?
Which one of the following describes the main action of Type II DNA topoisomerases?
Which of the following best describes the mechanism of action for DNA topoisomerases?
Which of the following best describes the mechanism of action for DNA topoisomerases?
What is required to initiate DNA synthesis during DNA-dependent DNA synthesis?
What is required to initiate DNA synthesis during DNA-dependent DNA synthesis?
What direction does DNA synthesis occur in during DNA-dependent DNA synthesis?
What direction does DNA synthesis occur in during DNA-dependent DNA synthesis?
Which type of exonuclease activity allows a DNA polymerase to correct errors it has just made?
Which type of exonuclease activity allows a DNA polymerase to correct errors it has just made?
What is the name of the enzyme that carries out DNA-dependent DNA synthesis?
What is the name of the enzyme that carries out DNA-dependent DNA synthesis?
What happens if a DNA synthesis occurs without a primer?
What happens if a DNA synthesis occurs without a primer?
What role do DNA polymerases play in DNA replication?
What role do DNA polymerases play in DNA replication?
What distinguishes leading strand synthesis from lagging strand synthesis at the replication fork?
What distinguishes leading strand synthesis from lagging strand synthesis at the replication fork?
What is the function of helicases during DNA replication?
What is the function of helicases during DNA replication?
Why is semiconservative replication considered an important mechanism?
Why is semiconservative replication considered an important mechanism?
What do mutations in DNA polymerases potentially lead to?
What do mutations in DNA polymerases potentially lead to?
What is the primary role of single-strand binding proteins (SSBs) during DNA replication?
What is the primary role of single-strand binding proteins (SSBs) during DNA replication?
How does the initiation of DNA synthesis differ between bacteria and eukaryotes?
How does the initiation of DNA synthesis differ between bacteria and eukaryotes?
What is the main difference in the synthesis of the leading strand compared to the lagging strand?
What is the main difference in the synthesis of the leading strand compared to the lagging strand?
Which of the following statements about the RNA primer during DNA replication is correct?
Which of the following statements about the RNA primer during DNA replication is correct?
What direction does DNA synthesis occur during the replication process?
What direction does DNA synthesis occur during the replication process?
What are the short segments of DNA synthesized on the lagging strand called?
What are the short segments of DNA synthesized on the lagging strand called?
What must happen to Okazaki fragments after their formation?
What must happen to Okazaki fragments after their formation?
Why were small DNA fragments only observed at shorter timepoints in the discovery of Okazaki fragments?
Why were small DNA fragments only observed at shorter timepoints in the discovery of Okazaki fragments?
Which enzyme is known for joining two Okazaki fragments in eukaryotes?
Which enzyme is known for joining two Okazaki fragments in eukaryotes?
What is the primary characteristic of the lagging strand during DNA replication?
What is the primary characteristic of the lagging strand during DNA replication?
What is the primary reason for the incomplete DNA synthesis during replication?
What is the primary reason for the incomplete DNA synthesis during replication?
What role does telomerase play in DNA replication?
What role does telomerase play in DNA replication?
What are the small sections of DNA synthesized on the lagging strand called?
What are the small sections of DNA synthesized on the lagging strand called?
Which enzyme is responsible for creating the RNA primer in prokaryotes during DNA replication?
Which enzyme is responsible for creating the RNA primer in prokaryotes during DNA replication?
What enzyme prevents the shortening of chromosomes in eukaryotic cells?
What enzyme prevents the shortening of chromosomes in eukaryotic cells?
What happens to the RNA primer after DNA pol III or DNA pol delta has extended the new strand?
What happens to the RNA primer after DNA pol III or DNA pol delta has extended the new strand?
What must occur to complete the synthesis of the lagging strand after Okazaki fragments are formed?
What must occur to complete the synthesis of the lagging strand after Okazaki fragments are formed?
In which direction does DNA synthesis occur on both the leading and lagging strands?
In which direction does DNA synthesis occur on both the leading and lagging strands?
What is the consequence of the inability to synthesize the final Okazaki fragment on a linear DNA molecule?
What is the consequence of the inability to synthesize the final Okazaki fragment on a linear DNA molecule?
What is a significant consequence of the end replication problem?
What is a significant consequence of the end replication problem?
In eukaryotic cells, which enzyme is specifically involved in removing RNA primers during lagging strand synthesis?
In eukaryotic cells, which enzyme is specifically involved in removing RNA primers during lagging strand synthesis?
How does the synthesis of the leading strand differ from that of the lagging strand?
How does the synthesis of the leading strand differ from that of the lagging strand?
What additive sequence does telomerase add to the ends of chromosomes?
What additive sequence does telomerase add to the ends of chromosomes?
What is the role of RNA primers in the synthesis of Okazaki fragments?
What is the role of RNA primers in the synthesis of Okazaki fragments?
During the synthesis of the leading strand, DNA is created in which manner compared to the lagging strand?
During the synthesis of the leading strand, DNA is created in which manner compared to the lagging strand?
What is characteristic of senescent cells in culture during replication?
What is characteristic of senescent cells in culture during replication?
What role does telomerase play in Tetrahymena thermophila?
What role does telomerase play in Tetrahymena thermophila?
Which pattern of DNA replication occurs first during the S phase?
Which pattern of DNA replication occurs first during the S phase?
Why might telomerase not be present in all cells in the body?
Why might telomerase not be present in all cells in the body?
What is a result of DNA replication involving modified nucleotides?
What is a result of DNA replication involving modified nucleotides?
In normal somatic cells, why do chromosomes shorten over time?
In normal somatic cells, why do chromosomes shorten over time?
Which of the following best describes telomerase activity in cancer cells?
Which of the following best describes telomerase activity in cancer cells?
What phase of the cell cycle is primarily concerned with DNA replication?
What phase of the cell cycle is primarily concerned with DNA replication?
Flashcards
Semiconservative replication
Semiconservative replication
DNA replication where each new DNA molecule contains one original strand and one newly synthesized strand.
Conservative replication
Conservative replication
A type of DNA replication where the original DNA molecule remains intact, and a completely new copy is made.
Dispersive replication
Dispersive replication
A type of DNA replication where the original DNA molecule is broken down into small pieces, and each new DNA molecule is made up of a mixture of old and new DNA fragments.
Plectonemic DNA
Plectonemic DNA
Signup and view all the flashcards
Topoisomerases
Topoisomerases
Signup and view all the flashcards
Circular DNA
Circular DNA
Signup and view all the flashcards
DNA replication
DNA replication
Signup and view all the flashcards
How does semiconservative replication work?
How does semiconservative replication work?
Signup and view all the flashcards
Density gradient centrifugation
Density gradient centrifugation
Signup and view all the flashcards
Cesium chloride (CsCl)
Cesium chloride (CsCl)
Signup and view all the flashcards
Heavy nitrogen (15N)
Heavy nitrogen (15N)
Signup and view all the flashcards
Nitrogen in DNA
Nitrogen in DNA
Signup and view all the flashcards
Meselson-Stahl experiment
Meselson-Stahl experiment
Signup and view all the flashcards
DNA unwinding
DNA unwinding
Signup and view all the flashcards
Rotation of DNA during replication
Rotation of DNA during replication
Signup and view all the flashcards
DNA topoisomerases
DNA topoisomerases
Signup and view all the flashcards
DNA supercoiling
DNA supercoiling
Signup and view all the flashcards
Type I DNA topoisomerases
Type I DNA topoisomerases
Signup and view all the flashcards
Type II DNA topoisomerases
Type II DNA topoisomerases
Signup and view all the flashcards
Topoisomerase II mechanism
Topoisomerase II mechanism
Signup and view all the flashcards
DNA helix unwinding
DNA helix unwinding
Signup and view all the flashcards
DNA Polymerase
DNA Polymerase
Signup and view all the flashcards
Helicases
Helicases
Signup and view all the flashcards
Okazaki Fragments
Okazaki Fragments
Signup and view all the flashcards
DNA-dependent DNA synthesis
DNA-dependent DNA synthesis
Signup and view all the flashcards
5' to 3' synthesis
5' to 3' synthesis
Signup and view all the flashcards
Primer in DNA synthesis
Primer in DNA synthesis
Signup and view all the flashcards
Exonuclease activity in DNA polymerase
Exonuclease activity in DNA polymerase
Signup and view all the flashcards
Proofreading in DNA synthesis
Proofreading in DNA synthesis
Signup and view all the flashcards
DNA ligase
DNA ligase
Signup and view all the flashcards
RNase H
RNase H
Signup and view all the flashcards
FEN1
FEN1
Signup and view all the flashcards
What are single-strand binding proteins (SSBs)?
What are single-strand binding proteins (SSBs)?
Signup and view all the flashcards
What is the leading strand?
What is the leading strand?
Signup and view all the flashcards
What is a primer in DNA replication?
What is a primer in DNA replication?
Signup and view all the flashcards
What is the lagging strand?
What is the lagging strand?
Signup and view all the flashcards
What are Okazaki fragments?
What are Okazaki fragments?
Signup and view all the flashcards
Leading Strand
Leading Strand
Signup and view all the flashcards
Lagging Strand
Lagging Strand
Signup and view all the flashcards
Primers in DNA replication
Primers in DNA replication
Signup and view all the flashcards
What is FEN1?
What is FEN1?
Signup and view all the flashcards
What is telomerase?
What is telomerase?
Signup and view all the flashcards
What happens when the end of a linear DNA molecule is reached?
What happens when the end of a linear DNA molecule is reached?
Signup and view all the flashcards
Why is the lagging strand synthesized discontinuously?
Why is the lagging strand synthesized discontinuously?
Signup and view all the flashcards
What is the function of RNase H?
What is the function of RNase H?
Signup and view all the flashcards
What are DNA ligases?
What are DNA ligases?
Signup and view all the flashcards
How is the lagging strand different from the leading strand?
How is the lagging strand different from the leading strand?
Signup and view all the flashcards
What is the role of telomerase in maintaining chromosome ends?
What is the role of telomerase in maintaining chromosome ends?
Signup and view all the flashcards
Why do most cells not have telomerase?
Why do most cells not have telomerase?
Signup and view all the flashcards
What are telomeres and what is their function?
What are telomeres and what is their function?
Signup and view all the flashcards
During which phase of the cell cycle does DNA replication take place?
During which phase of the cell cycle does DNA replication take place?
Signup and view all the flashcards
Explain the basic process of DNA replication.
Explain the basic process of DNA replication.
Signup and view all the flashcards
What is the role of DNA polymerase in DNA replication?
What is the role of DNA polymerase in DNA replication?
Signup and view all the flashcards
Describe the process of replication fork formation.
Describe the process of replication fork formation.
Signup and view all the flashcards
What is the significance of semi-conservative replication?
What is the significance of semi-conservative replication?
Signup and view all the flashcards
Study Notes
DNA Replication
- DNA replication is essential for cell division and life.
- DNA needs to double to distribute equal amounts of DNA when cells divide.
- Defects in DNA replication can cause diseases like cancer.
- DNA topoisomerases are crucial for efficient and accurate DNA replication. They solve the problem of DNA double helix unwinding during strand separation.
Types of DNA Replication
- Semiconservative replication: Each new DNA molecule consists of one original strand and one new strand. This was experimentally proven.
- Conservative replication: Both parental strands remain together and create two new strands that form a new double helix.
- Dispersive replication: Both parental strands are dispersed into new DNA strands.
Semiconservative replication proof
- Meselson-Stahl experiment (1959): Distinguished semiconservative replication from other models by using isotopes of nitrogen.
- Bacteria were grown in a medium containing heavy nitrogen (15N).
- The bacteria's DNA was then transferred to a medium containing normal nitrogen (14N).
- DNA was extracted and analyzed by density gradient centrifugation.
- The results indicated that after one cycle of replication, the DNA was intermediate in density. This supported the semiconservative model.
The role of topoisomerases in DNA replication
- DNA topoisomerases prevent supercoiling during DNA replication.
- Supercoils form when DNA strands are separated.
How topoisomerases work
- Type I Topoisomerases: Create a single-strand break in the DNA, allows another segment of DNA to pass through, and reseals the break. Type I topoisomerases allow the DNA to relieve twisting stress by making a single cut.
- Type II Topoisomerases: Create a double-strand break, pass a segment of DNA through the gap, and then reseal the breaks. Type II topoisomerases resolve the knots formed by removing twists, and the DNA continues to unwind for replication.
DNA Supercoiling
- Supercoiling occurs when DNA strands are separated.
- Topoisomerases remove or prevent supercoiling.
Additional notes
- A typical bacterial chromosome is a circular DNA molecule (approximately 4 million base pairs).
- Bacteria can divide every 20 minutes.
- A circular DNA molecule would have to rotate very rapidly to replicate its genome every 20 minutes (approximately 20,000 revolutions per minute).
- DNA synthesis proceeds in the 5' to 3' direction.
- Important enzymes involved in replication: DNA Polymerase I, DNA Polymerase III, DNA polymerase α, DNA polymerase δ, primase, FEN1.
- Reading Materials: Brown, Chapter 10 (pages 187-191, 192-193) and Alberts, Chapter 6 (pages 199-205, 212).
- Online resources are available on Blackboard.
Studying That Suits You
Use AI to generate personalized quizzes and flashcards to suit your learning preferences.