DNA Replication and Structure

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24 Questions

What is the composition of each daughter DNA molecule?

One old strand and one new strand

What is the base pairing rule in DNA replication?

Adenine pairs only with Thymine

What is the direction of the complementary strand in DNA replication?

Opposite direction of the template strand

What is the function of DNA polymerase in DNA replication?

Synthesis of new DNA strands

What is the role of DNA ligase in DNA replication?

Joining Okazaki fragments

What is the direction of DNA synthesis?

5' to 3' direction

What is the function of topoisomerase in DNA replication?

Relieving torsional strain

What is the requirement for DNA synthesis?

Both a template and a primer

What is the direction of DNA synthesis in the leading strand?

5´- 3´ direction

What is the function of the primase enzyme?

To synthesize a short stretch of RNA complementary to the template DNA strands

What is the role of DNA polymerase ε in replication?

To synthesize the leading strand

What is the function of ligase enzyme in replication?

To connect Okazaki fragments into one continuous strand

What is the direction of DNA synthesis in the lagging strand?

Direction away from the replication fork

What are Okazaki fragments?

Small DNA segments synthesized in a discontinuous manner

What is the direction of the replication fork movement?

Towards Ori

What is the direction of DNA polymerase δ synthesis in the lagging strand?

In the opposite direction of the advancing replication fork

What is the primary function of helicase enzymes in DNA replication?

To break the hydrogen bonds between DNA strands

What is the purpose of topoisomerase enzymes in DNA replication?

To solve the problem of supercoiling

What is the characteristic of the short sequence at the origin of replication?

Composed only of AT base pairs

What is the role of single-stranded binding proteins in DNA replication?

To keep the two strands of DNA apart

What is the shape of the structure formed during DNA replication?

V-shaped

What is the problem that occurs in the region of DNA ahead of the replication fork?

Supercoiling

What is the function of the primer in DNA replication?

To initiate DNA synthesis

What is the direction of DNA synthesis in semi-conservative replication?

5´-3´

Study Notes

Structure of DNA

  • Each daughter DNA molecule consists of one old strand (parental strand) and one new strand (from free nucleotides in the nucleus)
  • The base pairing rule is maintained: Adenine pairs with Thymine (A-T, two H bonds) and Cytosine pairs with Guanine (C-G, three H bonds)
  • A + G = T + C in DNA molecule

Replication Process

  • Replication is a bidirectional process that proceeds in both directions
  • Synthesis of new strand occurs in 5' to 3' direction by DNA polymerase
  • The process requires a template, primer, and substrates (dATP, dGTP, dCTP, and dTTP)

Enzymes and Proteins Involved

  • DNA helicases: unwind double-stranded DNA
  • Single-stranded DNA binding protein (ssDB): stabilizes single-stranded DNA
  • Primase: synthesizes RNA primer
  • DNA polymerase: chief enzyme for DNA chain elongation, repair, and proofreading
  • DNA ligase: joins Okazaki fragments
  • Topoisomerase: relieves torsional strain by cutting and joining single strands or both strands

Steps of DNA Replication

  • Identification of the origin of replication
  • Unwinding of double-stranded DNA by DNA helicase
  • Binding of single-stranded DNA by ssDB
  • Synthesis of RNA primer by primase
  • Synthesis of new DNA strand by DNA polymerase
  • Proofreading and repair by DNA polymerase
  • Ligation of newly synthesized DNA segments by DNA ligase

Leading Strand and Lagging Strand

  • Leading strand: synthesized continuously in 5' to 3' direction by DNA polymerase ε
  • Lagging strand: synthesized discontinuously in short fragments (Okazaki fragments) by DNA polymerase δ

Primers Removal and Ligation

  • Excision of RNA primers by exonucleases
  • Removal of RNA primers and ligation of newly synthesized DNA segments by DNA ligase

This quiz covers the process of DNA replication, including the conservation of one parent strand, the formation of a new strand, and the importance of base pairing rules. It also touches on the anti-parallel structure of DNA strands.

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