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Questions and Answers
Nonhistone proteins are believed to form a scaffold for organizing the shape of metaphase chromosomes.
Nonhistone proteins are believed to form a scaffold for organizing the shape of metaphase chromosomes.
True
High salt treatments do not affect the compact configuration of metaphase chromosomes.
High salt treatments do not affect the compact configuration of metaphase chromosomes.
False
The bottoms of loops in metaphase chromosomes remain attached to histone proteins after high salt treatment.
The bottoms of loops in metaphase chromosomes remain attached to histone proteins after high salt treatment.
False
There is a debate about whether the nonhistone protein scaffold organizes metaphase chromosomes or is just a remnant from treatment.
There is a debate about whether the nonhistone protein scaffold organizes metaphase chromosomes or is just a remnant from treatment.
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Euchromatin has a higher compaction level compared to heterochromatin.
Euchromatin has a higher compaction level compared to heterochromatin.
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Chromosomes can be classified only by their size.
Chromosomes can be classified only by their size.
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A karyotype is an arrangement of chromosomes from largest to smallest.
A karyotype is an arrangement of chromosomes from largest to smallest.
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A deletion in chromosome structure refers to a portion of the chromosome being added.
A deletion in chromosome structure refers to a portion of the chromosome being added.
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Translocation involves a segment of one chromosome attaching to a non homologous chromosome.
Translocation involves a segment of one chromosome attaching to a non homologous chromosome.
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There are four main categories for centromere position classification.
There are four main categories for centromere position classification.
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Inversions cause the genetic material on a chromosome to be duplicated.
Inversions cause the genetic material on a chromosome to be duplicated.
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Giemsa staining is used to reveal the colors of chromosomes.
Giemsa staining is used to reveal the colors of chromosomes.
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Different chromosomes of the same species can be distinguished from each other.
Different chromosomes of the same species can be distinguished from each other.
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The phenotypic consequences of deletions are solely dependent on the number of genes lost.
The phenotypic consequences of deletions are solely dependent on the number of genes lost.
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Reciprocal translocations involve two different chromosomes exchanging segments.
Reciprocal translocations involve two different chromosomes exchanging segments.
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A chromosomal deletion occurs when a chromosome breaks and a fragment is lost.
A chromosomal deletion occurs when a chromosome breaks and a fragment is lost.
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Duplications generally have more harmful effects than deletions of similar size.
Duplications generally have more harmful effects than deletions of similar size.
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Cri-du-chat syndrome is caused by a duplication in chromosome 5.
Cri-du-chat syndrome is caused by a duplication in chromosome 5.
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The phenotype of an individual with an inversion can be affected if the breakpoints occur in a vital gene.
The phenotype of an individual with an inversion can be affected if the breakpoints occur in a vital gene.
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Most inversions in the human population result in detectable genetic abnormalities.
Most inversions in the human population result in detectable genetic abnormalities.
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Individuals with one normal chromosome and one inverted chromosome are referred to as inversion homozygotes.
Individuals with one normal chromosome and one inverted chromosome are referred to as inversion homozygotes.
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Translocations occur when segments between homologous chromosomes exchange genetic material.
Translocations occur when segments between homologous chromosomes exchange genetic material.
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Telomeres help prevent chromosomes from fusing or sticking to each other.
Telomeres help prevent chromosomes from fusing or sticking to each other.
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Crossing-over during meiosis can be problematic for individuals with inversion heterozygotes.
Crossing-over during meiosis can be problematic for individuals with inversion heterozygotes.
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A dicentric chromosome has two centromeres and is created during reciprocal translocations.
A dicentric chromosome has two centromeres and is created during reciprocal translocations.
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Endopolyploidy refers to diploid animals producing tissues that are polyploid.
Endopolyploidy refers to diploid animals producing tissues that are polyploid.
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Polytene chromosomes are primarily found in the liver cells of mammals.
Polytene chromosomes are primarily found in the liver cells of mammals.
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A polytene chromosome is produced by cellular division followed by chromosome replication.
A polytene chromosome is produced by cellular division followed by chromosome replication.
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Polyploidy is a condition where organisms have more than two sets of chromosomes, which is common in plants.
Polyploidy is a condition where organisms have more than two sets of chromosomes, which is common in plants.
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Triploid organisms typically have a balanced separation of chromosomes during meiosis.
Triploid organisms typically have a balanced separation of chromosomes during meiosis.
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Seedless fruits like watermelons are often produced through diploid varieties.
Seedless fruits like watermelons are often produced through diploid varieties.
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Meiotic and mitotic nondisjunction can affect phenotypic outcomes in organisms.
Meiotic and mitotic nondisjunction can affect phenotypic outcomes in organisms.
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Colchicine is known for inducing polyploidy in plant species.
Colchicine is known for inducing polyploidy in plant species.
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Many fruits and grains are examples of polyploid organisms.
Many fruits and grains are examples of polyploid organisms.
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All polyploid organisms are fertile and produce viable gametes.
All polyploid organisms are fertile and produce viable gametes.
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Reciprocal translocations are commonly associated with significant phenotypic consequences.
Reciprocal translocations are commonly associated with significant phenotypic consequences.
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Balanced translocations do not change the total amount of genetic material.
Balanced translocations do not change the total amount of genetic material.
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Unbalanced translocations often result in a doubling or deletion of genetic material.
Unbalanced translocations often result in a doubling or deletion of genetic material.
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The Robertsonian translocation is the most common chromosomal rearrangement in humans.
The Robertsonian translocation is the most common chromosomal rearrangement in humans.
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Aneuploidy refers to variations in the number of complete sets of chromosomes.
Aneuploidy refers to variations in the number of complete sets of chromosomes.
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Trisomy is an example of aneuploidy where there is an increase in chromosome number by one.
Trisomy is an example of aneuploidy where there is an increase in chromosome number by one.
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All chromosomal abnormalities that occur during gamete formation lead to viable offspring.
All chromosomal abnormalities that occur during gamete formation lead to viable offspring.
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Older parents are less likely to have children with aneuploidies.
Older parents are less likely to have children with aneuploidies.
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Polyploidy is generally considered a normal condition in mammals.
Polyploidy is generally considered a normal condition in mammals.
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Haplodiploid is a term that describes organisms with male drones carrying a single set of chromosomes.
Haplodiploid is a term that describes organisms with male drones carrying a single set of chromosomes.
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Down syndrome is often a result of chromosomal nondisjunction during meiosis II.
Down syndrome is often a result of chromosomal nondisjunction during meiosis II.
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All aneuploidies cause lethal outcomes in humans.
All aneuploidies cause lethal outcomes in humans.
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Individuals with aneuploidy will always exhibit no phenotypic abnormalities.
Individuals with aneuploidy will always exhibit no phenotypic abnormalities.
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Study Notes
DNA: The Genetic Material
- DNA is the genetic material of eukaryotes
- A single set of human chromosomes, when stretched end-to-end, would be over 1 meter long
- The cell's nucleus is only 2 to 4 mm in diameter
- DNA must be tightly compacted to fit within the nucleus
Structure of Eukaryotic Chromosomes in Nondividing Cells
- Chromatin is a DNA-protein complex
- Chromatin is composed of nucleosomes, the 30-nm fiber, and radial loop domains
- Nucleosomes support the beads-on-a-string model
- Noll's results support the beads-on-a-string model
- A chromosome territory is a distinct region for each chromosome in the nucleus
- Euchromatin and heterochromatin differ in their degree of condensation
- Constitutive heterochromatin and facultative heterochromatin also differ in their degree of condensation
Eukaryotic Chromatin Compaction
- DNA must be tightly packaged within the nucleus
- Interactions between DNA and proteins facilitate compaction
- In eukaryotes, this DNA-protein complex is known as chromatin
- Changes in proteins affect chromatin compaction during the cell cycle
Nucleosomes
- The nucleosome is the repeating structural unit of eukaryotic chromatin
- A nucleosome is double-stranded DNA wrapped around an octamer of histone proteins.
- The octamer is composed of two copies each of four different histones (H2A, H2B, H3, and H4)
- 146 or 147 base pairs of DNA make 1.65 negative superhelical turns around the octamer
- The linker region between nucleosomes is 20 to 100 base pairs
Histone Proteins
- Histone proteins contain positively-charged amino acids (lysine and arginine)
- These amino acids bind to the negatively charged phosphates in the DNA
- Histone proteins have a globular domain and a flexible charged amino terminus (tail)
- There are five types of histones: H2A, H2B, H3, H4 (core histones), and H1 (linker histone)
The Structure of the Nucleosome
- Roger Kornberg proposed a model of nucleosome structure in 1974.
- DNA double helix wraps around an octamer of core histone proteins
- Kornberg based this proposal on biochemical experiments, X-ray diffraction studies, and electron microsocopy images
The Structure of the Nucleosome2
- Markus Noll tested Kornberg's model
- If Kornberg's model is correct, Digesting the linker region of chromatin should result in DNA fragments that are only 200 base pairs long
- Linker DNA is more accessible than core DNA to the enzyme DNase I
- DNase I cuts should occur in the linker DNA but not the DNA wrapped around the core histones
Nucleosomes Join to Form a 30-nm Fiber
- Nucleosomes associate with each other to form a more compact 30-nm fiber
- This structure shortens the total length of DNA 7-fold
- The zigzag model for the structure of the 30-nm fiber is currently a model
- The structure is complex and has been difficult to determine
Further Compaction of the Chromosome
- Nucleosomes and the 30-nm fiber shorten the DNA about 50-fold.
- A third level of compaction involves formation of loops (called loop domains)
- CCCTC binding factor (CTCF) binds to three regularly spaced repeats of the sequence CCCTC
- Two different CTCFs bind to the DNA to form a loop
- SMC proteins can also form a loop
- SMC proteins are often found in the region of CTCFs
Chromosome Territories
- Each chromosome in the nucleus is located in a distinct chromosome territory
- These are visible when chromosomes are fluorescently labeled in interphase cells
Heterochromatin versus Euchromatin
- Euchromatin is less condensed and transcriptionally active
- Heterochromatin is tightly compacted and transcriptionally inactive
Constitutive versus Facultative Heterochromatin
- Constitutive heterochromatin is present in all cell types and contains highly repetitive sequences
- Examples include centromeres and telomeres
- Facultative heterochromatin differs among different cells of the body
- It occurs where genes are located
- It can convert to euchromatin as a way to regulate gene expression
Structure of Eukaryotic Chromosomes During Cell Division
- The levels of compaction lead to a metaphase chromosome
- As cells enter M phase, the level of compaction dramatically changes.
Metaphase Chromosomes
- Nucleosomes form a zigzag structure to form a 30-nm fiber
- 30-nm fibers form loop domains.
- Closer association of loop domains with each other and between adjacent nucleosomes.
- The diameter of a metaphase chromosome is 700 nm; two chromatids have a diameter of 1400 nm.
- Metaphase chromosomes are very compact, which may result in little gene transcription.
Metaphase Chromosomes2
- Controversy over whether or not nonhistone proteins form a scaffold for organizing the shape of metaphase chromosomes
- When a metaphase chromosome is treated with high salt to remove the histones the highly compact configuration is lost
- Bottoms of loops remain attached to a scaffold made of nonhistone proteins.
Deletions
- The phenotypic consequences of deletions depend on the size of the deletion and the chromosomal material that is deleted, and whether or not the lost genes are vital to the survival of the organism
- A chromosomal deletion occurs when a chromosome breaks and a fragment is lost.
- A deletion may be terminal or interstitial.
- Deletions can result in harmful effects, such as Cri-du-chat syndrome in humans
Duplications
- Duplications result in extra genetic material
- Duplications may be caused by abnormal crossing over
- Nonallelic homologous recombination may occur where the sites of duplication are similar but not exactly the same.
- Duplications tend to have milder effects compared to deletions
Inversions
- A chromosomal inversion is a segment that has been flipped to the opposite orientation
- Pericentric inversions contain the centromere within the inverted region
- Paracentric inversions contain the centromere outside the inverted region
- In rare cases, inversions can alter the phenotype of an individual
- The breaks leading to the inversion may occur in a vital gene
Inversion Heterozygotes
- Individuals with one normal chromosome and one inverted chromosome may be phenotypically normal
- However, they have a high probability of producing abnormal gametes due to crossing over in the inverted segment
- Nondisjunction may result in unequal segregation of homologous chromosomes in meiosis, which can cause a dicentric chromosome or an acentric fragment.
Translocations
- A chromosomal translocation occurs when a segment of one chromosome becomes attached to another
- Broken chromosome ends lack telomeres and become reactive
- In reciprocal translocations, two non-homologous chromosomes exchange genetic material
Reciprocal Translocations
- Reciprocal translocations lead to a rearrangement of the genetic material
- They are usually without phenotypic consequences, but in a few cases may result in position effects due to changes in gene expression
Unbalanced Translocations
- Carriers of balanced translocations are at risk of having offspring with unbalanced translocations
- In unbalanced translocations, significant portions of genetic material are duplicated and or deleted.
Robertsonian Translocation
- Most common type of chromosome rearrangement in humans
- The majority of chromosome 21 is attached to chromosome 14
- This translocation occurs such that the breaks occur at the extreme ends of two non-homologous chromosomes
- The small acentric fragments are lost; larger fragments fuse at centromeric regions to form a single chromosome
Changes in Chromosome Number: An Overview
- Polyploidy and Aneuploidy are two main variations of chromosome number
- Euploidy is the variation in the number of complete sets of chromosomes
- Aneuploidy is the variation in particular chromosomes within a set
- Examples of euploidy include triploid (3n), tetraploid (4n) and polyploid
- Examples of aneuploidy include trisomy (2n +1), monosomy (2n-1)
Aneuploidy in humans
- Autosomal aneuploidies most compatible with survival are trisomies 13, 18, and 21
- Sex chromosome aneuploidies generally have less severe effects due to X inactivation
- All but one X chromosome is transcriptionally suppressed
- Phenotypes of X chromosome aneuploidies may be due to expression of X-linked genes prior to X-inactivation
Influence of Age on Aneuploidies
- Some human aneuploidies are influenced by parental age
- Older parents are more likely to produce abnormal offspring, particularly in Down syndrome (Trisomy 21)
- Nondisjunction, usually in meiosis I in the oocyte, may contribute to aneuploidy
- Primary oocytes are produced in the ovary of a fetus before birth, are arrested in prophase I, and remain arrested until ovulation
Euploidy
- Most species of animals are diploid organisms
- Polyploidy in mammals is generally a lethal condition
Euploidy 2
- Some euploidy variations are naturally occurring, like with bees, which are haplodiploid
- Female bees are diploid, and male bees are monoploid (contain a single set of chromosomes)
- Many examples of vertebrate polyploid animals have been discovered, such as the frog Hyla
Endopolyploidy
- Diploid animals sometimes produce tissues that are polyploid, which is termed endopolyploidy
- Liver cells of diploid animals can be triploid, tetraploid, or even octoploid
- The polytene chromosomes of insects provide an unusual example of natural variation in ploidy
Polytene Chromosomes
- Polytene chromosomes occur mainly in the salivary glands of Drosophila and a few other insects
- Polytene chromosomes have facilitated the study of the organization and functioning of interphase chromosomes
- Polytene chromosomes are easily seen under a microscope even in interphase
- Each polytene chromosome has a characteristic banding pattern
- During interphase the chromosomes undergo repeated rounds of chromosome replication without cellular division in the salivary glands in Drosophila and some other insects to eventually become a bundle termed a polytene chromosome
Polyploidy
- Polyploidy is a condition where cells of an organism have more than two paired sets of chromosomes
- Polyploidy is common in plants, particularly among 30 to 35% of ferns and flowering plants
- Polyploid strains are often larger in size and more robust, and many fruits and grains are polyploids
Polyploids
- Polyploids with an odd number of chromosome sets are usually sterile, as they cannot normally produce functional gametes
- This may be due to unequal separation of homologous chromosomes during anaphase I in this triploid organism
Sterility in Agriculture
- Sterility is generally a detrimental trait, but in some agricultural applications can be desirable
- Triploid varieties of certain fruits (watermelon, bananas) and flowers (marigolds) are sterile and thus seedless - often desirable characteristics in agriculture
- Seedless plants are commonly propagated by cuttings
Mechanisms That Produce Variation in Chromosome Number
- Meiosis and mitosis nondisjunction
- Autoploidy
- Alloploidy
- Allopolyploidy
- Colchicine promotes polyploidy
Chromosome Number Variation
- Meiotic nondisjunction
- Mitotic nondisjunction
- Alloploidy (interspecies crosses)
Meiotic Nondisjunction
- Nondisjunction is the failure of chromosomes to segregate properly during anaphase (either meiosis I or II)
- Meiotic nondisjunction can produce cells with too many or too few chromosomes
- If a gamete with an abnormal chromosome number is involved in fertilization, the zygote will have an abnormal number of chromosomes
Complete Nondisjunction
- In rare cases, all chromosomes can undergo nondisjunction, resulting in one diploid daughter cell and one without chromosomes
- The chromosome-less cell is nonviable, but the diploid cell can participate in fertilization with a normal gamete, producing a triploid individual
Mitotic Nondisjunction
- Mitotic nondisjunction occurs after fertilization when sister chromatids separate improperly in daughter cells
- It results in one cell having complete sets of chromosomes (normal) and one daughter cell with incomplete sets (monosomic)
- Chromosome loss can happen where one sister chromatid does not migrate to a pole in the daughter cell
Autopolyploidy
- Autopolyploidy results from changes in the number of complete chromosome sets within an organism
- Can be produced through complete nondisjunction, resulting in an individual having 1 or more extra chromosome sets.
Allopolyploidy
- Allopolyploidy is a type of polyploidy that occurs when a polyploid offspring is generated from two distinct parental species.
- These offspring usually contain complete chromosome sets from both parent species.
Experimental Treatments Can Promote Polyploidy
- Polyploid and allopolyploid plants often exhibit desirable traits, so inducing these conditions in plants can be advantageous in agriculture
- Abrupt changes in temperature or the drug colchicine may induce polyploidy.
- Colchicine binds to tubulin, and interferes with proper chromosome segregation, potentially promoting nondisjunction
Chromosome Classification
- Chromosomes can be classified based on size, position of the centromere, and banding patterns
- Metacentric, submetacentric, acrocentric, and telocentric chromosomes differ by centromere location
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Description
Test your knowledge on the intricate details of chromosome structure and function. This quiz covers topics such as nonhistone proteins, chromatin types, karyotypes, centromere classifications, and the effects of treatments on chromosomes. Dive into the fascinating world of genetics and see how well you understand these concepts!