Podcast
Questions and Answers
What is the role of telomeres in chromosomes?
What is the role of telomeres in chromosomes?
- To initiate DNA replication
- To mark histones for remodeling
- To prevent degradation and ensure complete replication (correct)
- To enable proper chromosome segregation
The leading strand during DNA replication is synthesized discontinuously as Okazaki fragments.
The leading strand during DNA replication is synthesized discontinuously as Okazaki fragments.
False (B)
What enzyme is responsible for sealing nicks in the DNA backbone during replication?
What enzyme is responsible for sealing nicks in the DNA backbone during replication?
Ligase
Euchromatin is the form of chromatin that is ______ and is transcriptionally active.
Euchromatin is the form of chromatin that is ______ and is transcriptionally active.
Which of the following processes occurs during PCR?
Which of the following processes occurs during PCR?
Match the parts of chromosomes with their functions:
Match the parts of chromosomes with their functions:
Heterochromatin is the form of chromatin that is transcriptionally active.
Heterochromatin is the form of chromatin that is transcriptionally active.
What is the resting potential of a neuron?
What is the resting potential of a neuron?
Inhibitory neurons increase the likelihood of firing action potentials.
Inhibitory neurons increase the likelihood of firing action potentials.
What triggers synaptic vesicles to dock at the membrane?
What triggers synaptic vesicles to dock at the membrane?
ATP production in mitochondria is powered by the flow of H⁺ ions through __________.
ATP production in mitochondria is powered by the flow of H⁺ ions through __________.
Match the following components of cellular respiration and photosynthesis:
Match the following components of cellular respiration and photosynthesis:
What role do +TIPs play in microtubule dynamics?
What role do +TIPs play in microtubule dynamics?
Gamma-tubulin is essential for initiating microtubule growth.
Gamma-tubulin is essential for initiating microtubule growth.
What are the three main types of microtubules present in the mitotic spindle?
What are the three main types of microtubules present in the mitotic spindle?
In anaphase, __________ microtubules shorten to pull sister chromatids apart.
In anaphase, __________ microtubules shorten to pull sister chromatids apart.
Match the motor proteins with their direction of movement:
Match the motor proteins with their direction of movement:
What happens to microtubules when GTP-tubulin cap is lost?
What happens to microtubules when GTP-tubulin cap is lost?
Kinesin proteins typically transport cargoes inward toward the cell center.
Kinesin proteins typically transport cargoes inward toward the cell center.
Where is the actin cytoskeleton primarily located within the cell?
Where is the actin cytoskeleton primarily located within the cell?
What is the primary function of SNAREs in cellular processes?
What is the primary function of SNAREs in cellular processes?
The __________ microtubules overlap at the center of the cell and help maintain spindle structure.
The __________ microtubules overlap at the center of the cell and help maintain spindle structure.
Rabs are responsible for regulating vesicle fusion with target membranes.
Rabs are responsible for regulating vesicle fusion with target membranes.
Match the phases with their events during mitosis:
Match the phases with their events during mitosis:
What are the proteins that mediate endocytosis?
What are the proteins that mediate endocytosis?
Proteins that lack specific sorting signals are typically transported by default to the __________.
Proteins that lack specific sorting signals are typically transported by default to the __________.
Which intermediate filaments provide structural support and flexibility in epithelial cells?
Which intermediate filaments provide structural support and flexibility in epithelial cells?
The process known as ER-associated degradation (ERAD) involves tagging misfolded proteins with ubiquitin.
The process known as ER-associated degradation (ERAD) involves tagging misfolded proteins with ubiquitin.
Match the following components with their respective roles:
Match the following components with their respective roles:
Name one type of protein involved in vesicle formation during transport.
Name one type of protein involved in vesicle formation during transport.
What is the first step in the assembly of intermediate filaments?
What is the first step in the assembly of intermediate filaments?
Intermediate filaments have distinct polarity.
Intermediate filaments have distinct polarity.
What happens to proteins without signals for vesicular trafficking?
What happens to proteins without signals for vesicular trafficking?
What is the function of intermediate filaments in the nucleus?
What is the function of intermediate filaments in the nucleus?
Intermediate filaments do not require ______ for their assembly.
Intermediate filaments do not require ______ for their assembly.
Match the following components with their description:
Match the following components with their description:
What happens during phosphorylation of intermediate filaments?
What happens during phosphorylation of intermediate filaments?
Microtubules are composed of heterodimers of alpha- and beta-tubulin.
Microtubules are composed of heterodimers of alpha- and beta-tubulin.
What triggers the breakdown of the nuclear envelope during mitosis?
What triggers the breakdown of the nuclear envelope during mitosis?
During dynamic instability, _______ hydrolyzes to GDP, causing shrinkage.
During dynamic instability, _______ hydrolyzes to GDP, causing shrinkage.
What drives the fast-growing end of microtubules?
What drives the fast-growing end of microtubules?
Flashcards
Resting potential
Resting potential
The difference in electrical charge across a neuron's membrane when it's not transmitting a signal.
Excitatory neurons
Excitatory neurons
Neurons that depolarize the membrane, increasing the likelihood of an action potential.
Inhibitory neurons
Inhibitory neurons
Neurons that hyperpolarize the membrane, decreasing the likelihood of an action potential.
Voltage-gated Ca²⁺ channels
Voltage-gated Ca²⁺ channels
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Chemiosmotic coupling
Chemiosmotic coupling
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Ubiquitination
Ubiquitination
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Chromatin Remodeling Complexes
Chromatin Remodeling Complexes
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Telomeres
Telomeres
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Centromeres
Centromeres
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Origins of Replication
Origins of Replication
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Euchromatin
Euchromatin
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Heterochromatin
Heterochromatin
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Apoptosis
Apoptosis
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Ubiquitin
Ubiquitin
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Proteasome
Proteasome
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ER-Associated Degradation (ERAD)
ER-Associated Degradation (ERAD)
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SNAREs
SNAREs
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v-SNAREs
v-SNAREs
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t-SNAREs
t-SNAREs
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Rabs
Rabs
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Coats (Clathrin, COPI, COPII)
Coats (Clathrin, COPI, COPII)
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Microtubule Dynamics at the Growing End
Microtubule Dynamics at the Growing End
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Microtubule Nucleation
Microtubule Nucleation
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Types of Microtubules in the Mitotic Spindle
Types of Microtubules in the Mitotic Spindle
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Spindle and Chromosome Events: Metaphase and Anaphase
Spindle and Chromosome Events: Metaphase and Anaphase
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Microtubule Motor Proteins: Dynein and Kinesin
Microtubule Motor Proteins: Dynein and Kinesin
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Actin Cytoskeleton: Location and Function
Actin Cytoskeleton: Location and Function
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Intermediate filaments
Intermediate filaments
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How are intermediate filaments built?
How are intermediate filaments built?
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What makes intermediate filaments unique?
What makes intermediate filaments unique?
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How is intermediate filament assembly regulated?
How is intermediate filament assembly regulated?
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What are microtubules made of?
What are microtubules made of?
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What is the polarity of microtubules?
What is the polarity of microtubules?
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What is dynamic instability?
What is dynamic instability?
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Where do microtubules start from?
Where do microtubules start from?
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Where do microtubules extend to?
Where do microtubules extend to?
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Why are microtubules important?
Why are microtubules important?
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Study Notes
Exam 1
- Chromatin: A complex of DNA and proteins, primarily histones, that compacts DNA in the nucleus.
- Nucleosome: The fundamental unit of chromatin, which is 147 base pairs of DNA wrapped around a core of 8 histone proteins (an octamer of H2A, H2B, H3, and H4).
- H1 histone: Links nucleosomes, forming higher-order structures.
- Chromatin Organization Levels: Nucleosome → 10 nm fiber → 30 nm fiber → higher-order folding into chromosomes.
Types of Chromatin
- Euchromatin: Loosely packed, transcriptionally active regions.
- Heterochromatin: Densely packed, transcriptionally inactive regions.
- Constitutive Heterochromatin: Always inactive, found in centromeres and telomeres.
- Facultative Heterochromatin: Can switch between active and inactive states, for example, X-chromosome inactivation.
Gene and Sequence Complexity in Eukaryotic Genomes
- Unique Sequences: Single-copy genes coding for proteins.
- Repetitive Sequences:
- Moderately Repetitive: Includes rDNA, tRNA, and histone genes.
- Highly Repetitive: Found in centromeres and telomeres (e.g., satellite DNA).
- Complexity arises from both coding and non-coding regions.
Nature of the Nucleolus
- Definition: A subnuclear structure where rRNA is synthesized and ribosome assembly begins.
- Location: Found in tandem arrays on acrocentric chromosomes.
- Function: Involved in rRNA transcription, catalyzed by RNA polymerase I, and ribosomal subunit assembly.
Consequences of Genetic Rearrangements
- Heterochromatin Rearrangements: Often silent because of the inactive state.
- Euchromatin Rearrangements: Can disrupt genes or regulatory elements, causing diseases like cancer.
Posttranslational Modifications and Complexes
- Histone Modifications:
- Acetylation (HATs): Activates transcription by loosening chromatin.
- Methylation (HMTs): Can activate or repress transcription depending on the site.
- Phosphorylation: Associated with chromatin condensation; and DNA repair.
- Ubiquitination: Marks histones for remodeling or degradation.
- Chromatin Remodeling Complexes: ATP-dependent complexes such as SWI/SNF, reposition or eject nucleosomes to allow access to DNA.
Functional Parts of Chromosomes
- Telomeres: Repetitive sequences (e.g., TTAGGG in humans) at chromosome ends, prevent degradation and ensure complete replication. Maintained by telomerase.
- Centromeres: Region where kinetochores attach, enabling proper chromosome segregation during mitosis. Composed of heterochromatin and satellite DNA.
DNA Replication and Repair
- Replication Process: Semi-conservative, bi-directional, involves enzymes such as helicase, primase, DNA polymerase, and ligase. Leading strand is synthesized continuously, while lagging strand is synthesized discontinuously as Okazaki fragments, later joined by ligase.
- PCR: Mimics DNA replication in a test tube; involves denaturation, annealing, and extension.
Exam 2
- Types of Chromatin in Eukaryotic Chromosomes: Euchromatin and Heterochromatin (facultative and constitutive).
Exam 4
- Ion and Solute Transport: Ions and solutes move across membranes via channels or transporters, depending on their properties and membrane permeability. Passive transport moves down concentration gradients, while active transport moves against gradients, requiring energy. Different types include channels, transporters (passive and active), symport, and antiport.
- Electrochemical Gradient: The combined effect of concentration and electrical gradients, influencing ion movement.
- Na+/K+ ATPase: A carrier protein, not a channel, that maintains the resting membrane potential by actively transporting 3 Na+ ions out and 2 K+ ions in.
- Action Potentials: Initiated by depolarization and propagated along the membrane by the sequential opening and closing of voltage-gated Na+ channels.
Additional Topics (Page 31 ff)
- Inhibitory vs. Excitatory Neurons: Neurons can affect post-synaptic potentials (PSP) by altering membrane potentials. Excitatory neurons depolarize to increase the likelihood of action potentials; inhibitory neurons hyperpolarize.
- Voltage-Gated Ca2+ Channels and Synaptic Vesicle Docking: Ca2+ influx through these channels into the presynaptic terminal triggers synaptic vesicle fusion to release neurotransmitters via exocytosis.
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