Retta - L18

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Questions and Answers

What is the primary function of autophagy in cells?

To execute cell death directly

To increase protein aggregation within cells

To remove dysfunctional organelles and recycle their components (correct)

To inhibit the degradation of toxic components

What structure is formed when molecules engulfed by the autophagosome fuse with the lysosome?

Proteasome

Autophagolysosome (correct)

Mitochondrion

Cytoplasm

Which of the following is NOT a trigger for macroautophagy?

Hormones

Amino acids

DNA replication (correct)

Growth factors

Which protein complex is significantly involved in regulating autophagy through its activation?

mTORC 1 Signup and view all the answers

What is the consequence of mTORC 1 activation in relation to autophagy?

It inhibits autophagy by phosphorylating target proteins. Signup and view all the answers

Which type of autophagy is primarily discussed in the context of the content?

Macroautophagy Signup and view all the answers

What is a critical aspect that should be considered regarding autophagy and cell death?

Autophagy is primarily a cell survival process. Signup and view all the answers

Which of the following describes the role of autophagy-related genes?

They are involved in regulating macroautophagy. Signup and view all the answers

What causes nrf2 to be induced at very high levels?

Accumulation of p62 Signup and view all the answers

Which statement is true regarding reactive oxygen species (ROS)?

They are beneficial at physiological levels but can be harmful at high levels. Signup and view all the answers

How does autophagy relate to viral infections?

It is initially induced but may be inhibited by high viral loads. Signup and view all the answers

What role does Vitamin D play in cellular mechanisms?

It modulates autophagy and has antioxidant effects. Signup and view all the answers

What happens when apoptosis is disrupted during development?

It can cause developmental abnormalities. Signup and view all the answers

What is the primary function of autophagy in cells during stressful conditions?

To degrade abnormal proteins and organelles Signup and view all the answers

What dual role does autophagy play in cancer?

It can either protect or promote cancer cell survival. Signup and view all the answers

Which of the following is true about MTORC1 in relation to autophagy?

Inhibition of MTORC1 is required to induce autophagy Signup and view all the answers

What role does cytochrome c play in the intrinsic pathway of apoptosis?

It binds to apoptotic protease activating factor to induce caspase activation. Signup and view all the answers

What role does Rapamycin play in the context of autophagy?

It inhibits the activation of MTORC1 Signup and view all the answers

What is a primary purpose of apoptosis in multicellular organisms?

To eliminate damaged or infected cells. Signup and view all the answers

Which of the following statements accurately describes the extrinsic pathway of apoptosis?

It primarily involves activation of initiator caspases via death receptor-ligand interaction. Signup and view all the answers

How do cells undergo programmed cell death?

Through apoptosis mechanisms. Signup and view all the answers

What is the function of the protein BID in apoptosis?

To connect intrinsic and extrinsic apoptotic pathways. Signup and view all the answers

What is the consequence of dysfunctional autophagy in cells?

Accumulation of dysfunctional organelles Signup and view all the answers

Which mechanism is primarily used to identify cells undergoing apoptosis in experimental studies?

Fluorescent dyes that mark apoptotic cells. Signup and view all the answers

Which substance is noted for being a biomarker for dysfunctional autophagy?

p62 Signup and view all the answers

Which event can trigger the intrinsic pathway leading to apoptosis?

DNA damage occurring in the cell. Signup and view all the answers

How does starvation induce autophagy?

By inhibiting MTORC1 Signup and view all the answers

What is the role of SMAC in the context of apoptosis?

To block XIAP, allowing caspase activation to proceed. Signup and view all the answers

What signifies a physiological role of nrf2 in cells?

Protecting cells from oxidative stress at normal levels. Signup and view all the answers

What type of diseases have been linked to dysfunctional autophagy?

Neurodegenerative and cardiovascular disorders Signup and view all the answers

What is the role of the NRF2 transcription factor in the context of autophagy?

It induces the transcription of antioxidant genes Signup and view all the answers

Which antioxidant compound is mentioned as potentially effective against CCM lesions?

Vitamin D Signup and view all the answers

What is the significance of reactive oxygen species in dysfunctional mitochondria?

They contribute to damage of macromolecules Signup and view all the answers

What role do ced3, ced4, and ced9 genes serve in C.elegans?

They play a key role in regulating apoptosis. Signup and view all the answers

Caspases are activated through a mechanism involving which of the following?

Proteolytic cleavage by other caspases. Signup and view all the answers

Which caspases are classified as cell death initiators?

Caspases 2 and 9. Signup and view all the answers

What is the primary function of bcl2 in relation to apoptosis?

It promotes cell survival. Signup and view all the answers

The primary targets of proteolytic enzymes activated by caspases include:

Cytosolic proteins and nuclear lamins. Signup and view all the answers

Why is the study of C.elegans significant in genetics research?

It allows mapping of cell lineage and apoptosis. Signup and view all the answers

Which of the following statements correctly describes the role of caspase activators?

They activate caspases to trigger apoptosis. Signup and view all the answers

What type of domain do initiator caspases typically contain?

Caspase activation and recruitment domain (CARD). Signup and view all the answers

Which statement about apoptotic pathways in vertebrates and C.elegans is true?

They reveal conserved molecular mechanisms. Signup and view all the answers

Study Notes

Autophagy (Self-Eating)

Autophagy is a cellular process for removing dysfunctional organelles and protein aggregates.
Dysfunctional molecules are engulfed by autophagosomes, which fuse with lysosomes for degradation.
Resulting degradation products are recycled for cellular use, particularly to maintain cellular health.
Autophagolysomes facilitate the degradation of damaged organelles and proteins.
While autophagy is crucial for cell survival, its direct role in cell death is not concretely established.
Macroautophagy is the primary form of autophagy, activating complex processes in response to growth factors and fluctuating nutrient levels.

Regulation of Autophagy

Autophagy is complexly regulated, influenced by stimuli like growth factors, amino acids, and hormones through PI3K signaling pathways.
Activation of the mTORC1 protein complex inhibits autophagy, while its inhibition stimulates the process.
Key inducers of autophagy include:
- Starvation: Lack of nutrients triggers degradation of non-essential components to produce new nutrients.
- Stressful conditions: Prompt autophagy to mitigate cellular distress through mTORC1 inhibition.
Rapamycin, derived from a bacterium, is effective in inducing autophagy by inhibiting mTORC1.

Mitophagy

Mitophagy is a specific form of autophagy that targets and removes dysfunctional mitochondria, which can generate harmful reactive oxygen species (ROS).
Preventing the accumulation of dysfunctional mitochondria is essential for cellular health.

Dysfunctional Autophagy and Diseases

Autophagy plays a critical role in various pathologies, including neurodegenerative and cardiovascular disorders.
Dysfunctional autophagy has been linked to diseases like cerebrovascular malformations (CCM) due to the accumulation of dysfunctional components.
Nobel Laureate Yoshinori Ohsumi highlighted the significance of dysfunctional autophagy in pathogenesis, particularly in the context of diseases like CCM.

Therapeutic Approaches to Induce Autophagy

Targeting molecular pathways underlying disease mechanisms opens up therapeutic options.
Rapamycin is explored for its potential in treating CCM by inducing autophagy.
Antioxidants, including superoxide dismutases and vitamin D, play a protective role by alleviating oxidative stress and might help in disease prevention through autophagy induction.

Autophagy Biomarkers and Mechanisms

P62 protein serves as a biomarker for dysfunctional autophagy; its accumulation indicates impaired processes.
Nrf2 is a major antioxidant transcription factor influenced by p62 levels, regulating genes that protect against oxidative stress.
There exists a balance with antioxidants; while beneficial, excessive levels can lead to harmful effects.

Autophagy in Infections and Cancer

Viruses may inhibit autophagy to facilitate their replication within host cells, highlighting a dual nature in infection responses.
In cancer, autophagy can be both pro- and anti-tumorigenic, depending on the cellular context; it helps to either promote cancer cell survival or protect against DNA damage.

Apoptosis

Apoptosis is a programmed mechanism crucial for normal development and tissue homeostasis, and eliminates damaged or potentially harmful cells.
Key functions include:
- Morphogenetic roles such as interdigital cell death during limb development.
- Sequential elimination of cells during metazoan development (ex: frog metamorphosis).

Mechanisms Identifying Apoptosis

C. elegans has been instrumental in understanding apoptosis mechanisms due to its simplified cellular structure and known cell fates.
Important genes such as ced3, ced4, and ced9 have been identified as crucial regulators of apoptosis.
Ced9 and its vertebrate homolog Bcl-2 are implicated in cancer due to their roles in regulating apoptosis; Bcl-2's mutation can promote cancer cell survival.

Caspase Activation in Apoptosis

Apoptosis is mediated by caspases, which are activated through proteolytic cascades.
Caspase activation is governed by various proteins, including Bcl-2 family members, which can promote or inhibit apoptosis.
Caspases are classified into initiation (like caspases 2, 8, and 10) and executioner caspases (caspases 3, 6, and 7), orchestrating the apoptotic response.

Conclusion

Both autophagy and apoptosis are vital for maintaining cellular integrity and function.
They represent two interconnected processes where cells either self-eat dysfunctional components or self-kill damaged cells, balancing survival and homeostasis.### Apoptosis Overview
Apoptosis is a programmed cell death process triggered by extracellular or intracellular stimuli.
Distinct pathways exist: the extrinsic pathway (death receptors) and the intrinsic pathway (mitochondrial involvement).

Initiator and Executor Caspases

Initiator caspases possess CARD or DAD domains facilitating interaction through adaptor proteins, promoting procaspase dimerization.
Reciprocal cleavage activates initiator caspases, leading to the activation of downstream executor caspases responsible for apoptosis.
Activated executor caspases target inhibitors of DNA endonucleases, crucial for DNA cleavage.

Monitoring Apoptosis

Apoptosis can be monitored via gel electrophoresis or fluorescent protein labeling to identify apoptotic cells.

Extrinsic Pathway

Triggered by extracellular signals binding to death receptors on plasma membranes, leading to apoptotic signaling.
Killer lymphocytes produce the ligand (e.g., Fas ligand) that activates death receptors, initiating the caspase cascade without provoking inflammation.

Intrinsic Pathway

Activated by internal stressors such as protein misfolding, oxidative stress, reactive oxygen species (ROS), or DNA damage.
p53 protein plays a critical role, activating other proteins (like Puma and Fas) that promote mitochondrial changes leading to cytochrome c release.
Cytochrome c, upon release from mitochondria, associates with Apaf1 to facilitate the formation of aggregates that activate procaspase 9.

Interconnection of Pathways

BID, a Bcl-2 family protein, links the extrinsic and intrinsic pathways; its cleavage by caspase 8 activates the intrinsic pathway.
Mitochondria release SMAC (an inhibitor of XIAP), preventing XIAP from inhibiting active caspase 9, which is essential for apoptosis to proceed.

Key Factors and Mechanisms

Cytochrome c release directly triggers intrinsic apoptosis, while triggers such as ROS and DNA damage activate the process through p53.
Both pathways converge at executor caspases, ensuring effective execution of apoptosis.

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Description

This quiz explores the concepts of cell death, specifically focusing on apoptosis and autophagy. Understand how autophagy works in removing dysfunctional organelles and protein aggregations through the autophagosome-lysosome pathway. Test your knowledge on these critical cellular processes.