Cell Culture Basics
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Questions and Answers

What is the primary difference between primary cells and immortalized cells?

  • Immortalized cells are taken directly from living tissue.
  • Primary cells are harder to culture than immortalized cells. (correct)
  • Primary cells can divide indefinitely.
  • Immortalized cells are derived from living tissue.

Cell lines derived from primary cultures have an indefinite life span.

False (B)

What term is used to describe the process of transferring cells to a new vessel for continued growth?

subcultured

Primary cells are obtained by dissociating tissue fragments _____ to single cells.

<p>enzymatically</p> Signup and view all the answers

Match the cell lines to their common uses:

<p>HEK = Human embryonic kidney cells A549 = Human lung carcinoma cells Jurkat = Human T lymphocyte cells Vero = African green monkey kidney cells</p> Signup and view all the answers

Which of the following cell lines is commonly used and originates from cancerous tissue?

<p>A549 (A)</p> Signup and view all the answers

Immortalized cells can be derived from normal tissues.

<p>False (B)</p> Signup and view all the answers

What is the term for the growth of cells in a controlled environment outside of their natural conditions?

<p>cell culture</p> Signup and view all the answers

What is the purpose of using media without phenol red in assays?

<p>To prevent interference in fluorescence experiments (D)</p> Signup and view all the answers

Fetal bovine serum (FBS) is a defined mixture of nutrients and growth factors.

<p>False (B)</p> Signup and view all the answers

What temperature and duration are required to heat inactivate serum for cell culture?

<p>56°C for 30 minutes</p> Signup and view all the answers

Serum provides various growth factors, including __________ and __________.

<p>fibroblast growth factor (FGF), epidermal growth factor (EGF)</p> Signup and view all the answers

Match the following components with their roles in cell culture:

<p>Albumin = Carries vitamins and hormones Transferrin = Carries iron Fibronection = Promotes cell adherence Antibiotics = Prevents bacterial growth</p> Signup and view all the answers

Which component in serum helps to neutralize proteases released by certain cells?

<p>Anti-protease ingredients (A)</p> Signup and view all the answers

Including antibiotics in cell culture is unnecessary when aseptic techniques are applied.

<p>False (B)</p> Signup and view all the answers

Name one vitamin that acts as a coenzyme in cell metabolism processes.

<p>Any vitamin (e.g., vitamin B complex)</p> Signup and view all the answers

Which condition can be treated with stem cell transplants from cord blood?

<p>Leukemia (C)</p> Signup and view all the answers

Cord blood stem cells are only used for research purposes.

<p>False (B)</p> Signup and view all the answers

What is cryopreservation?

<p>A method of freezing and storing cells at very low temperatures.</p> Signup and view all the answers

Which medium is suitable for fast-growing tumor cells and contains iron and phenol red?

<p>DMEM (C)</p> Signup and view all the answers

The cryoprotectant used in cryopreservation helps prevent the formation of __________.

<p>ice crystals</p> Signup and view all the answers

RPMI-1640 is primarily used for mouse kidney cell cultures.

<p>False (B)</p> Signup and view all the answers

Match the following conditions with their corresponding treatments using cord blood:

<p>Leukemia = Stem cell transplant from cord blood Anemia = Stem cell transplant from bone marrow Sickle cell disease = Stem cell transplant from cord blood Parkinson's disease = Research for treatment using cord blood</p> Signup and view all the answers

What is primarily used as a cryoprotectant in the freezing medium?

<p>DMSO (C)</p> Signup and view all the answers

What are the two main categories of cell culture contaminants?

<p>Chemical contaminants and biological contaminants.</p> Signup and view all the answers

Cryopreservation can minimize genetic change in stem cells.

<p>True (A)</p> Signup and view all the answers

DMEM is modified from __________.

<p>Eagle's Medium</p> Signup and view all the answers

What is the minimum cell viability required for successful cryopreservation?

<p>75%</p> Signup and view all the answers

IMDM is particularly well-suited for which type of cell culture?

<p>Hybrid cell selection after cell fusion (C)</p> Signup and view all the answers

Match the following cell culture media with their characteristics:

<p>DMEM = Suitable for tumor cells with fast growth RPMI-1640 = Used for human lymphocyte cultures IMDM = Used for hybrid cell selection Ham's F-12 = Supports serum-free growth of mammalian cells</p> Signup and view all the answers

It is impossible to reduce the frequency of cell culture contaminants.

<p>False (B)</p> Signup and view all the answers

Name one type of chemical contaminant commonly found in cell culture.

<p>Endotoxins</p> Signup and view all the answers

Which cell types can mesenchymal stem cells (MSCs) differentiate into?

<p>Osteoblasts, Chondrocytes, Adipocytes (C)</p> Signup and view all the answers

Mesenchymal stem cells (MSCs) are primarily derived from peripheral blood.

<p>False (B)</p> Signup and view all the answers

Name one therapeutic application of mesenchymal stem cells (MSCs).

<p>Tissue repair</p> Signup and view all the answers

The percentage of cell viability is calculated after counting viable and dead cells in the _____ large quadrants.

<p>4</p> Signup and view all the answers

Match the following sources of MSCs with their respective types:

<p>Bone marrow = Primary source of MSCs Umbilical cord = Source of MSCs Adipose tissue = Source of MSCs Dental pulp = Source of MSCs</p> Signup and view all the answers

Which of the following is NOT a source of mesenchymal stem cells (MSCs)?

<p>Spleen (C)</p> Signup and view all the answers

Hematopoietic stem cells (HSCs) are capable of differentiating into a variety of cell types, including fat cells.

<p>False (B)</p> Signup and view all the answers

What is the primary function of hematopoietic stem cells (HSCs)?

<p>To differentiate into blood cells and immune cells</p> Signup and view all the answers

What does a flow cytometer primarily measure?

<p>Fluorescence intensity from labeled antibodies (C)</p> Signup and view all the answers

Flow cytometry involves passing cells in single file in front of a laser for analysis.

<p>True (A)</p> Signup and view all the answers

What is the role of phosphatidylserine (PS) in early apoptosis?

<p>PS moves to the extracellular membrane.</p> Signup and view all the answers

During ________, cells exhibit nuclear condensation and DNA fragmentation.

<p>apoptosis</p> Signup and view all the answers

Match the following terms to their descriptions:

<p>Necrosis = Loss of membrane integrity and cell swelling Apoptosis = Cell death process involving nuclear condensation Annexin V = Binds to externalized phosphatidylserine Propidium iodide = Viability dye that penetrates damaged cells</p> Signup and view all the answers

Which of the following is a characteristic feature of necrosis?

<p>Loss of membrane integrity and cell lysis (D)</p> Signup and view all the answers

Late-stage apoptosis is marked by the loss of membrane integrity and the ability of PI to penetrate the cell.

<p>True (A)</p> Signup and view all the answers

What is the function of sheath fluid in flow cytometry?

<p>To focus the cell suspension.</p> Signup and view all the answers

Flashcards

Cell culture

The process of removing cells from an animal or plant and growing them in a controlled environment.

Primary culture

A cell culture that is directly taken from a living organism and grown in a lab setting.

Cell line

A cell culture that has undergone at least one division and can continue dividing indefinitely.

Subculturing (passaging)

The process of transferring cells from one culture vessel to another with a fresh growth medium.

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Finite cells

Cells that have a limited lifespan and eventually stop dividing.

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Immortalized cells

Cells that have been genetically modified to allow them to divide indefinitely.

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Primary cells

Cells taken directly from living tissue and cultured in a lab.

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Immortalized cells

Cells derived from cancerous tissues or genetically modified to divide indefinitely.

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Phenol red-free media

A type of cell culture media that lacks phenol red, a pH indicator dye. This media is often used for colorimetric assays or fluorescence experiments where the color of phenol red would interfere with the readouts.

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Serum (e.g., fetal bovine serum)

A common component in many cell cultures, derived from blood. It's a complex mixture of nutrients, growth factors, and other components essential for cell growth and survival.

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Heat inactivation of serum

A process where serum is heated to 56°C for 30 minutes. This inactivates the complement system (a part of the immune response) and eliminates potential mycoplasma contamination.

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Essential nutrients in serum

Essential nutrients like amino acids, vitamins, inorganic minerals, fats, and nucleic acid derivatives that are crucial for cell growth and metabolism.

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Cell adhesion factors in serum

Proteins like fibronectin and laminin present in serum that help cells adhere to surfaces in the culture environment.

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Growth factors in serum

Growth factors like FGF, EGF, and PDGF present in serum that stimulate cell division and proliferation.

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Binding proteins in serum

Proteins like albumin and transferrin that bind and transport important molecules like vitamins, fats, hormones, and iron within the cell culture environment.

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Antibiotics in cell culture

Antibiotics are frequently used in cell cultures to prevent contamination by bacteria or fungi. This is especially crucial when aseptic techniques are employed.

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What is cord blood banking?

Stem cells from a newborn's umbilical cord blood can be stored for later use in medical treatments, such as transplants for diseases like leukemia or sickle cell anemia.

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What can stem cell transplants treat?

Stem cell transplantation can help people with certain cancers like leukemia and lymphoma, bone marrow diseases, anemia like sickle cell disease, and some immune disorders.

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What is the potential of cord blood research?

Cord blood is being researched for its potential use in treating other serious conditions like Parkinson's disease and diabetes.

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What is cryopreservation?

Cryopreservation is a method to freeze and store cells at extremely low temperatures (-200°C) so they can be used later.

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What is the role of cryoprotectants in cryopreservation?

Cryoprotectants like DMSO or glycerol prevent ice crystal formation during freezing, protecting cells from damage.

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How are cryovials labeled?

Cryovials are labeled with important information like date, cell type, and passage number to keep track of the frozen cells.

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What are the steps before cryopreservation?

Before freezing, cells are washed with Phosphate Buffered Saline (PBS) and trypsin.

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What is included in the freezing medium?

A freezing medium containing a cryoprotectant is added to the cells before freezing.

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DMEM (Dulbecco's Modified Eagle's Medium)

A modified version of Eagle's MEM containing approximately four times the vitamins, amino acids, and two to four times the glucose. DMEM is commonly used for cells with faster growth rates and difficult attachment, like epithelial and fibroblast cells. It also includes iron and phenol red.

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RPMI-1640 (Roswell Park Memorial Institute -1640)

A complex medium typically used for human lymphocytes, but can support a wide range of cell types. It is a modified version of DMEM.

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IMDM (Iscove's Modified Dulbecco's Medium)

A modification of DMEM that is well-suited for difficult proliferating, low-density cell cultures. It is useful for hybrid cell selection after fusion and selection of transformed cells following DNA transfection.

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McCoy's 5A

A modification of Basal Medium 5A that supports the growth of primary cultures derived from diverse tissues. It is a general-purpose medium for both primary and established cell lines.

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Ham's F-12

A versatile medium used for the serum-free growth of Chinese Hamster Ovary (CHO) cells, as well as other mammalian cells. It is a general-purpose medium.

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Cell Culture Contaminants

Contamination in cell culture comes in two main forms: chemical and biological. Chemical contaminants include impurities in media, sera, and water, as well as endotoxins, plasticizers, and detergents. Biological contaminants include bacteria, molds, yeasts, viruses, mycoplasma, and cross-contamination from other cell lines.

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Bacterial Contamination

Many bacterial strains can grow in the commonly used media for mammalian cell culture. Bacterial contamination can severely affect cell growth and experimental results.

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Aseptic Technique

Aseptic technique is a set of procedures used to prevent microbial contamination. It involves practices such as sterilizing equipment, working in a sterile environment, and minimizing the time materials are exposed to the air.

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What are Mesenchymal Stem Cells?

Mesenchymal stem cells (MSCs) are adult stem cells with a high capacity for self-renewal and differentiation, capable of becoming various cell types.

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What can MSCs differentiate into?

MSCs can differentiate into various cell types, including bone cells (osteoblasts), cartilage cells (chondrocytes), and fat cells (adipocytes).

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Name three types of cells MSCs can become.

Osteoblasts, chondrocytes, adipocytes.

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Can MSCs differentiate into other cell types besides bone, cartilage and fat?

MSCs have the potential to differentiate into muscle cells (myocytes), nerve cells (neurocytes), and stromal cells.

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Where can MSCs be found?

MSCs can be isolated from various sources such as bone marrow, adipose tissue, umbilical cord, peripheral blood, placental tissue, synovial fluid, and dental pulp.

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What are some potential uses of MSCs?

MSCs have been studied for various therapeutic applications, including tissue repair, regenerative medicine, and cell-based therapies for various diseases.

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What is cell culture?

The process of removing cells from a living organism and cultivating them in a controlled environment.

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How is bone marrow extracted from a mouse?

The process of separating bone marrow from a mouse, using a combination of anesthesia, dissection, and sterile techniques.

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What is flow cytometry?

A technique used to analyze and sort individual cells based on their physical and biological properties. It uses lasers and fluorescent dyes to identify and separate cells based on their size, granularity, and specific protein expression.

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What is "staining" in flow cytometry?

The process of using fluorescently-labeled antibodies to bind to specific proteins or molecules on the surface or inside of cells, making them visible under a flow cytometer.

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How does Annexin V identify apoptotic cells?

A method of identifying apoptotic cells by measuring the exposure of phosphatidylserine (PS) on the cell surface using fluorescently labeled Annexin V. PS is normally located on the inner leaflet of the cell membrane but flips to the outer membrane during apoptosis.

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What is the role of Propidium Iodide (PI) in flow cytometry?

A dye that can penetrate cells only when their plasma membrane is compromised, indicating cell death. It's often used in combination with Annexin V to differentiate early and late stage apoptosis.

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Describe Apoptosis.

Apoptosis is a programmed cell death that occurs in a highly regulated process, involves DNA fragmentation and cell shrinkage.

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Describe Necrosis.

Necrosis is a form of cell death that occurs when the cell is damaged by external factors, often leading to inflammation and tissue damage. It involves cell swelling, loss of membrane integrity, and release of cellular contents.

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How does flow cytometry use light scattering?

Flow cytometry uses the principle of scattering light from a laser beam to identify and quantify different cell populations. This scattering patterns give information about the cell's size and granularity.

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What are some applications of flow cytometry?

Flow cytometer has various applications, including: 1) Immunophenotyping: identifying cell types based on their surface markers. 2) Cell cycle analysis: determining the stage of the cell cycle (e.g., G0, G1, S, G2, M). 3) Cell viability analysis: measuring the number of live and dead cells in a sample. 4) Cell sorting: isolating specific cell populations based on their characteristics.

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Study Notes

Stem Cell Biology (BIO414) Lab Information

  • Course Coordinator: Dr. Shaza Ahmed
  • Course Assistant: Aya El-Sharkawy
  • Fall 2024

Lab 1: Introduction to Cell Culture

  • Cell culture involves removing cells from animals or plants & growing them in artificial environments.
  • Cells can be taken directly from tissue or derived from established cell lines.
  • Primary cultures are the initial stage where cells from tissue are isolated and proliferated until they fill the available space.
  • Subculturing (or passaging) is necessary at confluence to provide more room for continued growth.
  • Primary cultures have a limited lifespan.

Primary vs Immortalized Cells

  • Primary cells are taken directly from living tissue.
  • Immortalized cells are derived from cancerous tissues or cells transfected with oncogenes.
  • Primary cells have a low survival rate and only a few divide.

Primary cell culture: By cell differentiation

  • Differentiated cell culture; differentiated cells have lost the capacity to differentiate further.
  • Stem cell culture; undifferentiated cells are able to differentiate into other cell types.
  • Monolayer cultures; anchorage-dependent cells grow as a continuous layer on the culture vessel.
  • Suspension cultures; cells grow freely in the medium.

STEM CELLS CLASSIFICATION

  • Totipotent: Differentiate into any cell type (e.g., zygotes)
  • Pluripotent: Differentiate into cells from any of the three germ layers (e.g., embryonic stem cells, iPSCs)
  • Multipotent: Differentiate into a limited range of cell types (e.g., adult stem cells - mesenchymal or hematopoietic)
  • Oligopotent: Differentiate into a limited number of cell types (e.g., adult stem cells - lymphoid, myeloid)
  • Unipotent: Differentiate into single cell type (e.g., adult stem cells - satellite, epidermal)

Cell Culture Laboratory Equipment

  • Biosafety Level 2 (BSL-2) lab is required
  • Class II biosafety cabinet (laminar flow hood)
  • CO2 incubator
  • Water bath
  • Centrifuge
  • Refrigerator and Freezer (-4°C, -20°C, and -80°C)
  • Inverted microscope
  • Autoclave
  • Liquid nitrogen or cryostorage container

Cell Culture Supplies

  • Cell culture vessels (flasks and plates)
  • Assorted sterile pipettes and pipetting devices
  • Cryovials
  • Falcons and Eppendorfs
  • Controlled-rate freezing container (canister)

Following Aseptic Technique During Cell Culture

  • Sterile work area; cell culture hood, restricted area, free from traffic, UV light sterilization, disinfected with 70% alcohol
  • Good personal hygiene; wash hands before and after handling cultures, wear PPE (gloves, safety glasses, closed-toe shoes, protective clothing)
  • Sterile reagents and media; reagents, media, or solutions must be sterilized with appropriate procedure before use.

Cell Culture Media Ingredients

  • Carbon source (e.g., glucose)
  • Buffering system (e.g., HEPES)
  • pH indicator (e.g., phenol red)
  • Serum (fetal bovine serum)
  • Metabolites, vitamins, and minerals
  • Antibiotics (penicillin/streptomycin)

Optimum Culture Conditions

  • Incubated in a sterile incubator
  • Tightly regulated temperature (e.g., water-jacketed incubator) and CO2 concentration
  • Ideal growth conditions are: 37°C, 5% CO2 with saturating humidity

Basal vs Complete Media

  • Basal media; minimal nutrients, including carbon source, amino acids, and salts, allowing addition of specific nutrients .
  • Complete media; wider range of essential nutrients, including vitamins and amino acids, often used when a large quantity of cells is needed.

Cell Viability

  • Cells can be counted using a hemocytometer (to determine the cell count and viability).
  • Trypan blue is added to distinguish between live and dead cells.

Lab 3: Culture of Stem Cells

  • Methods for Obtaining Stem Cells
    • From cell bank or isolating cells from donor tissue
  • Methods to isolate cells from tissue
    • Enzymatic method
    • Explant method
  • Enzymatic Method: Using proteolytic enzymes to detach cells from tissue (dilute or inhibit enzyme reaction).
  • Explant Method: No enzyme required, the tissue is excised and placed in the media to allow cells to migrate.

Adherent vs. Suspended Cells

  • Adherent cells; grow attached to a solid or semi-solid surface (e.g., tissue culture flasks, plates).
  • Suspended cells; grow freely in a liquid medium (e.g., suspension culture).

Manipulation of Stem Cells

  • Cell Passaging/Splitting; dividing a confluent culture to provide room.
  • Media Change (Feeding); removing and replacing the culture media.
  • Differentiation; a less specialized cell developing into a more specialized cell type.

Lab 4: Cord Blood Banking & Cryopreservation

  • Cord blood banking; collecting and storing cord blood after birth.
  • Cord blood is rich in stem cells, which can treat many diseases
  • Stem cells is used for transplants in sick people or medical research.

Cryopreservation

  • Process of freezing cells at very low temperatures (-200°C) , maintaining their viability .
  • Special freezing medium is used; normal serum-supplemented medium plus cryoprotectant (such as DMSO or glycerol) to prevent ice crystal formation.

Lab 5: Extraction of Mesenchymal Stem Cells

  • Mesenchymal Stem Cells (MSCs): Fibroblastoid multipotent adult stem cells with self-renewal and differentiation.
  • Sources of MSCs: bone marrow, adipose tissue, umbilical cord matrix.
  • Location of MSCs: perivascular niche.

Lab 6: Flow Cytometry for Stem Cell Markers

  • Flow Cytometry: A technique to analyze cell populations, properties, and viability.
  • Flow cytometer measures various aspects and components of cells.

Immunophenotyping

  • Immunophenotyping; labeling cells with fluorescently tagged antibodies; gaining insight into immune response composition

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Test your knowledge on the fundamentals of cell culture, including the differences between primary and immortalized cells. This quiz covers essential concepts such as cell line usage, growth factors, and environmental conditions for cell growth.

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