Podcast
Questions and Answers
What type of traits are governed by a single gene and often follow Mendelian inheritance patterns?
What type of traits are governed by a single gene and often follow Mendelian inheritance patterns?
- Polygenic Traits
- Omnigenic Traits
- Monogenic Traits (correct)
- Oligogenic Traits
Which model suggests that nearly all genes in a genome can influence a trait indirectly through core genes?
Which model suggests that nearly all genes in a genome can influence a trait indirectly through core genes?
- Polygenic Model
- Monogenic Model
- Oligogenic Model
- Omnigenic Model (correct)
Heritability values greater than what threshold are typically considered significant enough to pursue gene identification?
Heritability values greater than what threshold are typically considered significant enough to pursue gene identification?
- 0.8
- 0.1
- 0.5
- 0.3 (correct)
What is the heritability formula used to calculate the genetic contribution to a quantitative trait?
What is the heritability formula used to calculate the genetic contribution to a quantitative trait?
What type of model describes the accumulation of genetic and environmental risk factors leading to disease occurrence?
What type of model describes the accumulation of genetic and environmental risk factors leading to disease occurrence?
Which of the following is NOT true about heritability?
Which of the following is NOT true about heritability?
Which of the following traits is an example of a polygenic trait?
Which of the following traits is an example of a polygenic trait?
What do endophenotypes represent in the context of genetics?
What do endophenotypes represent in the context of genetics?
What is the gold standard method to control false positive associations in genetic studies?
What is the gold standard method to control false positive associations in genetic studies?
What happens to statistical power when a stricter alpha level is chosen?
What happens to statistical power when a stricter alpha level is chosen?
Which of the following is a potential issue that could occur due to hidden population stratification?
Which of the following is a potential issue that could occur due to hidden population stratification?
What is indicated by an r-squared value of 1 in terms of linkage disequilibrium?
What is indicated by an r-squared value of 1 in terms of linkage disequilibrium?
Which factor can help mitigate confounding caused by family structure in genetic studies?
Which factor can help mitigate confounding caused by family structure in genetic studies?
Why are rare variants challenging to detect in genetic studies?
Why are rare variants challenging to detect in genetic studies?
What characterizes linkage disequilibrium (LD)?
What characterizes linkage disequilibrium (LD)?
What is the role of Tag SNPs in genetic association studies?
What is the role of Tag SNPs in genetic association studies?
What does Linkage Disequilibrium (LD) signify?
What does Linkage Disequilibrium (LD) signify?
What is a haplotype?
What is a haplotype?
What is the primary purpose of imputation in genetics?
What is the primary purpose of imputation in genetics?
What is indicated by an r-squared value of 1 in imputation?
What is indicated by an r-squared value of 1 in imputation?
How does pharmacodynamics differ from pharmacokinetics?
How does pharmacodynamics differ from pharmacokinetics?
What is the goal of pharmacogenetics?
What is the goal of pharmacogenetics?
Why is the VKORC1 gene variant significant in pharmacogenetics?
Why is the VKORC1 gene variant significant in pharmacogenetics?
What role do reference panels play in imputation?
What role do reference panels play in imputation?
What is the primary purpose of identifying genetic profiles in pharmacogenetics?
What is the primary purpose of identifying genetic profiles in pharmacogenetics?
Which type of study is best suited for analyzing very low variance with large effect sizes?
Which type of study is best suited for analyzing very low variance with large effect sizes?
Which study is conducted to assess the adverse reactions to medications in pharmacogenetics?
Which study is conducted to assess the adverse reactions to medications in pharmacogenetics?
What does a Weighted Genetic Risk Score (GRS) take into account?
What does a Weighted Genetic Risk Score (GRS) take into account?
What coding scheme is used in the additive model for genetic variants?
What coding scheme is used in the additive model for genetic variants?
Which statement accurately describes Genome-Wide Association Studies (GWAS)?
Which statement accurately describes Genome-Wide Association Studies (GWAS)?
In the pipeline using GWAS, what is the first step in identifying a causal gene for a disease?
In the pipeline using GWAS, what is the first step in identifying a causal gene for a disease?
What is the significance of assessing pleiotropic effects in drug targets?
What is the significance of assessing pleiotropic effects in drug targets?
Why is it important for GWAS to have large sample sizes?
Why is it important for GWAS to have large sample sizes?
Which method is primarily utilized for gene replacement in gene therapy?
Which method is primarily utilized for gene replacement in gene therapy?
What is the appropriate genome-wide significance threshold for GWAS?
What is the appropriate genome-wide significance threshold for GWAS?
What is a major weakness of Candidate Gene Studies?
What is a major weakness of Candidate Gene Studies?
What does the genetic risk score (GRS) represent?
What does the genetic risk score (GRS) represent?
What plays a more critical role in determining power in GWAS compared to other epidemiological studies?
What plays a more critical role in determining power in GWAS compared to other epidemiological studies?
Which of the following is NOT a step in the process of identifying drug targets via GWAS?
Which of the following is NOT a step in the process of identifying drug targets via GWAS?
Which factor may lead to genomic inflation in GWAS results?
Which factor may lead to genomic inflation in GWAS results?
Which statement best reflects the outcomes expected from replicating findings in GWAS?
Which statement best reflects the outcomes expected from replicating findings in GWAS?
What is one limitation of GWAS mentioned in relation to statistical correction?
What is one limitation of GWAS mentioned in relation to statistical correction?
What characterizes cancer as a set of disorders?
What characterizes cancer as a set of disorders?
What does the Multiple-Hit Theory in cancer genetics describe?
What does the Multiple-Hit Theory in cancer genetics describe?
How do oncogenes typically promote cancer?
How do oncogenes typically promote cancer?
What role do tumor suppressor genes play in normal cell function?
What role do tumor suppressor genes play in normal cell function?
Which type of mutation commonly contributes to the activation of oncogenes?
Which type of mutation commonly contributes to the activation of oncogenes?
What is the consequence of a loss of function in DNA repair genes?
What is the consequence of a loss of function in DNA repair genes?
How do mutations in tumor suppressor genes typically affect cancer progression?
How do mutations in tumor suppressor genes typically affect cancer progression?
What gene mutation can lead to an increased risk of developing cancer in individuals?
What gene mutation can lead to an increased risk of developing cancer in individuals?
Flashcards
Monogenic Trait
Monogenic Trait
A trait controlled by a single gene, often following Mendelian inheritance patterns.
Polygenic Trait
Polygenic Trait
A trait influenced by multiple genes with additive effects. Often involves environmental factors.
Omnigenic Model
Omnigenic Model
A model where nearly all genes in a genome can influence a trait indirectly through core genes in relevant pathways.
Threshold Model
Threshold Model
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Endophenotype
Endophenotype
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Heritability
Heritability
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Additive Genetic Variance
Additive Genetic Variance
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Environmental Variance
Environmental Variance
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Low variance, low effect size
Low variance, low effect size
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Very low variance, large effect size
Very low variance, large effect size
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Very high variance, low effect size
Very high variance, low effect size
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Additive model in genetic coding
Additive model in genetic coding
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Candidate Gene Studies
Candidate Gene Studies
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Genome-Wide Association Studies (GWAS)
Genome-Wide Association Studies (GWAS)
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GWAS Correction for Multiple Testing
GWAS Correction for Multiple Testing
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Replication in GWAS
Replication in GWAS
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Importance of Sample Size in GWAS
Importance of Sample Size in GWAS
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Genomic Inflation Factor
Genomic Inflation Factor
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Unacceptable Inflation
Unacceptable Inflation
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Statistical Power
Statistical Power
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Bonferroni Correction
Bonferroni Correction
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Population Stratification
Population Stratification
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Linkage Disequilibrium (LD)
Linkage Disequilibrium (LD)
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Haplotype
Haplotype
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Tag SNP
Tag SNP
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Causal Variant
Causal Variant
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Imputation
Imputation
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Reference Panel
Reference Panel
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Pharmacodynamics
Pharmacodynamics
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Pharmacokinetics
Pharmacokinetics
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Pharmacogenetics
Pharmacogenetics
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Warfarin Example
Warfarin Example
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GWAS for Drug Response
GWAS for Drug Response
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GWIS
GWIS
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Loss-of-Function vs Gain-of-Function
Loss-of-Function vs Gain-of-Function
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Pleiotropy
Pleiotropy
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Genetic Risk Scores (GRS)
Genetic Risk Scores (GRS)
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Gene Therapy for Mendelian Disorders
Gene Therapy for Mendelian Disorders
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CRISPR-Cas9 for Gene Therapy
CRISPR-Cas9 for Gene Therapy
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Cancer: What's it all about?
Cancer: What's it all about?
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What causes cancer?
What causes cancer?
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Role of Proto-oncogenes
Role of Proto-oncogenes
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What are Tumor Suppressor Genes?
What are Tumor Suppressor Genes?
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DNA Repair Genes
DNA Repair Genes
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Multiple-Hit Theory
Multiple-Hit Theory
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What is Germline Mutation?
What is Germline Mutation?
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How can mutations cause cancer?
How can mutations cause cancer?
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Study Notes
Genetic Architectures
- Monogenic traits are controlled by a single gene, often following Mendelian patterns. Examples include cystic fibrosis.
- Polygenic traits are controlled by multiple genes with additive effects. Examples include height.
- Oligogenic models involve a small number of genes influencing a trait or disease.
- Omnigenic models suggest nearly all genes in a genome can influence a trait indirectly via core genes in relevant pathways.
Dichotomous Phenotypes
- Threshold models describe disease risk as a hypothetical quantitative trait. Disease occurs when liability crosses a threshold.
- Burden of both genetic and environmental risk factors contribute to disease occurrence, as seen in schizophrenia.
- Endophenotypes are multiple measurable quantitative phenotypes with distinct genetic architectures.
- Liability is a cumulative effect of unfavorable phenotypes.
Heritability and Variance Explained
- Heritability represents the proportion of variance in a quantitative trait attributable to genetic variation.
- Heritability above 0.3 is considered high enough to warrant gene searches. Heritability values apply to populations, not individuals.
- Heritability is not probability of inheritance; it describes proportion of variance explained by genetics.
- Heritability increases as environmental variance decreases.
Genetic Association Studies
- Studies design various approaches for complex disorders, including low variance, high effect size studies, association studies, and GWAS.
- Candidate gene studies examine specific genes based on existing hypotheses, whereas genome-wide studies evaluate all measured genetic variants.
- GWAS are hypothesis-free, analyze millions of variants, and are valuable for large sample sizes, but need larger samples compared to candidate gene studies.
- Replication of GWAS results in independent samples is critical for minimizing false positives.
Confounding in Genetic Studies
- Chance associations can occur even in the absence of causality. Correction strategies, like Bonferroni corrections, can mitigate these random chance positives.
- Hidden population stratification (genetic and phenotypic differences between populations within a group) can introduce spurious associations.
- Alleles and disease prevalence may vary between population groups, which can confound results if not accounted for.
- Linkage disequilibirum and haplotypes can be investigated through imputation. (Variants correlated in a population).
Pharmacodynamics and Pharmacogenetics
- Pharmacodynamics examines how a drug impacts the body (e.g., receptors, enzymes, transporters).
- Pharmacogenetics refers to how genetic variation affects a drug response to determine optimal treatment.
- Pharmacogenetics aims to match drugs with individuals to maximize effectiveness and minimize side effects.
From Genetic Associations to Drugs
- Genetic association studies can be used to identify genes linked to diseases.
- Functional studies clarify the direction of the association (gain or loss of function effects).
- Pleotropic effects are investigated; if genes affect multiple characteristics, this may impact treatment approaches.
- Clinical trial progression proceeds from preclinical trials to FDA approval.
Genetic Risk Scores
- Genetic risk scores (GRS) are single variables summing risk allele counts for a disease, potentially weighted according to effect size.
- GRS can predict disease risk and determine treatment strategies.
Gene Therapy
- Gene therapy focuses on replacing or correcting harmful mutations.
- Various approaches exist (CRISPR-Cas9), and gene therapy currently mainly targets Mendelian conditions.
Cancer Genetics
- Cancer results from abnormal cell proliferation, inhibited apoptosis, loss of differentiation, invasiveness, or metastasis.
- Multiple-hit theories propose accumulation of mutations in oncogenes and tumor suppressor genes as a major causal factor for cancer.
- Proto-oncogenes promote cell growth.
- Tumor suppressor genes regulate cell cycle progression and cell death, acting as brakes on cell proliferation and cancer development.
- DNA repair genes are crucial for detecting and repairing DNA damage.
Precision Medicine
- Precision medicine aims to tailor treatments based on a patient's specific genetic profile, improving treatments for complex diseases and cancer.
- Targeted therapies act on specific cancer-causing mutations.
- Personalized medicine is a tailored approach to disease and treatment, considering the genetic make-up of the individual.
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