Biology Enzymes Overview

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Questions and Answers

What is one of the primary functions of enzymes in biochemical reactions?

  • Consume reactants in the process
  • Increase the temperature of the reaction
  • Change the reaction products
  • Decrease the activation energy required (correct)

Which class of enzymes is involved in oxidation-reduction reactions?

  • Lyases
  • Hydrolases
  • Transferases
  • Oxidoreductases (correct)

What characterizes the specificity of enzymes?

  • They can be easily synthesized by the body.
  • They can catalyze multiple unrelated reactions.
  • They have a precise enzyme-substrate interaction. (correct)
  • They only work in high temperatures.

Why do some enzymes require co-factors for their activity?

<p>Co-factors enhance the enzyme's catalytic ability. (B)</p> Signup and view all the answers

Which of the following statements about enzymes is incorrect?

<p>Enzymes are consumed during the reaction. (C)</p> Signup and view all the answers

What model is commonly used to describe enzyme kinetics?

<p>Michaelis-Menten model (A)</p> Signup and view all the answers

Chymotrypsin is often used to illustrate which concept in enzyme mechanisms?

<p>Transition state catalysis (D)</p> Signup and view all the answers

What is the role of metalloenzymes?

<p>To require metal ions for activity (D)</p> Signup and view all the answers

What is the role of enzymes in relation to activation energy?

<p>Enzymes lower the activation energy of a reaction. (B)</p> Signup and view all the answers

Which type of enzyme catalyzes the cleavage of chemical bonds without hydrolysis or oxidation?

<p>Lyases (D)</p> Signup and view all the answers

What happens to the rate of product formation over time during a reaction?

<p>It levels off when the reaction reaches equilibrium. (B)</p> Signup and view all the answers

What is meant by the term 'transition state' in enzyme catalysis?

<p>The transient molecular structure with the highest free energy. (A)</p> Signup and view all the answers

Which type of interaction significantly contributes to the stabilization of the transition state in enzymatic reactions?

<p>Hydrogen bonds and ionic interactions (A)</p> Signup and view all the answers

What best describes the relationship between an enzyme's structure and its substrate for effective catalysis?

<p>The enzyme's structure must be complementary to the transition state. (A)</p> Signup and view all the answers

Which of the following statements is true regarding the role of enzymes in achieving equilibrium?

<p>Enzymes accelerate the attainment of equilibrium but do not shift its position. (C)</p> Signup and view all the answers

Which of the following best describes hydrolases?

<p>They perform hydrolysis reactions. (B)</p> Signup and view all the answers

What is the significance of the Michaelis constant (Km) in enzyme kinetics?

<p>Km is the substrate concentration at which the reaction rate is half of Vmax. (D)</p> Signup and view all the answers

At which substrate concentration range does the initial velocity (V0) show a near-linear increase?

<p>Low substrate concentration (C)</p> Signup and view all the answers

What occurs to the reaction rate when substrate concentration exceeds a certain threshold?

<p>The reaction rate plateaus close to Vmax. (B)</p> Signup and view all the answers

What is the rate-limiting step in enzyme-catalyzed reactions according to the Michaelis-Menten model?

<p>Breakdown of the enzyme to its product. (D)</p> Signup and view all the answers

What occurs to the binding energy of interactions in the context of enzyme-substrate complex formation?

<p>It compensates for the increase in free energy in the system. (C)</p> Signup and view all the answers

How does the initial velocity (V0) change in response to increases in substrate concentration at high levels of substrate?

<p>It increases by smaller extents. (C)</p> Signup and view all the answers

What assumption is made regarding product concentration at the beginning of a reaction in the Michaelis-Menten framework?

<p>Product concentration is negligible. (D)</p> Signup and view all the answers

Why is the concentration of substrate ([S]) considered constant during the initial velocity measurement?

<p>Only a small percentage of substrate is converted to product. (A)</p> Signup and view all the answers

Flashcards

What are enzymes?

Enzymes are biological catalysts that increase the rate of chemical reactions without being consumed in the process.

What is enzyme specificity?

Enzymes are highly specific, meaning they typically catalyze a single reaction or a set of closely related reactions.

What is catalytic power?

Enzymes can accelerate chemical reactions by factors of up to a million or more.

What are cofactors?

Many enzymes require additional molecules called cofactors for activity. Cofactors can be organic molecules (coenzymes) or metal ions.

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What do oxidoreductases do?

Oxidoreductases are enzymes that catalyze oxidation-reduction reactions, involving the transfer of electrons between molecules.

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What do transferases do?

Transferases move functional groups from one molecule to another.

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What do hydrolases do?

Hydrolases break down molecules by adding water.

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What do lyases do?

Lyases break down molecules without adding water, often forming double bonds.

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Transferases

A group of enzymes that catalyze the transfer of a functional group (e.g., phosphate, amino, or acyl groups) from one molecule to another.

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Hydrolases

A type of enzyme that breaks down chemical bonds using water (hydrolysis) as a reactant.

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Lyases

Catalyze the cleavage of chemical bonds (C-C, C-O, C-N and others) by other means than hydrolysis and oxidation.

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Isomerases

Enzymes that catalyze the rearrangement of atoms within a molecule, converting one isomer into another.

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Ligases

Enzymes that join two molecules together, often using energy from the hydrolysis of ATP.

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Activation energy (DGâ§§)

The energy difference between the transition state and the substrate. The higher the activation energy, the slower the reaction.

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How enzymes lower activation energy

Enzymes lower the activation energy by stabilizing the transition state, which speeds up the reaction. Think of it like using a ramp to get over a hill.

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Binding energy

The binding energy between the enzyme and substrate contributes to lowering the activation energy. This is like a 'handshake' that makes the reaction easier.

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Initial Velocity at Low Substrate

At low substrate concentrations, the initial velocity of the reaction increases almost linearly with an increase in substrate concentration.

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Initial Velocity at High Substrate

At high substrate concentrations, the initial velocity increases by a smaller extent in response to an increase in substrate concentration.

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Rate-limiting step

The rate-limiting step in the Michaelis-Menten model is the breakdown of the enzyme-substrate complex (ES) into product and free enzyme.

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Michaelis-Menten Plot

A plot showing the rate of an enzyme-catalyzed reaction as a function of substrate concentration. It describes how the rate of an enzymatic reaction changes as the concentration of the substrate changes.

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Michaelis Constant (Km)

The Michaelis constant (Km) is the substrate concentration at which the reaction rate is half of the maximum velocity (Vmax).

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Maximum Velocity (Vmax)

The maximum velocity (Vmax) of an enzyme-catalyzed reaction is the rate at which the reaction proceeds when the enzyme is saturated with substrate. This means that all the active sites of the enzyme are occupied.

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Michaelis-Menten Equation

The Michaelis-Menten equation describes the relationship between the initial velocity of an enzyme-catalyzed reaction, the substrate concentration, and the maximum velocity and Michaelis constant of the enzyme.

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Breakdown of ES Complex

The breakdown of the enzyme-substrate complex (ES) to product and free enzyme is a slow step in enzyme kinetics. It determines the overall rate of the reaction.

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Study Notes

Enzymes

  • Enzymes are biological catalysts that speed up chemical reactions in living organisms
  • Enzymes are highly specific, catalyzing a single chemical reaction or a set of closely related reactions.
  • Enzymes accelerate reactions by lowering the activation energy
  • Enzymes are not consumed in the reaction

Enzyme properties

  • Catalytic power: Enzymes greatly accelerate reaction rates, often by orders of magnitude faster than uncatalyzed reactions
  • High specificity: Enzymes are highly specific for their substrates, meaning they only catalyze reactions involving particular substrates
  • Enzymes are not changed by the reaction. They are not consumed in the reactions they catalyze

Enzyme mechanisms & categories

  • Many enzymes require co-factors for activity
    • Organic compounds: coenzymes (derived from vitamins)
    • Metal ions: metalloenzymes
  • Enzymes are classified into six major classes based on the type of reaction they catalyze.
    • Oxidoreductases: Oxidation-reduction reactions (e.g., lactate dehydrogenase)
    • Transferases: Group transfer reactions (e.g., nucleoside monophosphate kinase)
    • Hydrolases: Hydrolysis reactions (e.g., chymotrypsin)
    • Lyases: Cleavage of chemical bonds (e.g., fumarase)
    • Isomerases: Isomerization reactions (e.g., triose phosphate isomerase)
    • Ligases: Formation of C—C, C—O, C—S, or C—N bonds (e.g., aminoacyl-tRNA synthetase)

Michaelis Menten Equation

  • The Michaelis-Menten equation describes the relationship between the initial rate of an enzyme-catalyzed reaction (Vo) and the substrate concentration ([S]).
  • Kinetic parameters can be drawn from a Michaelis-Menten curve

Enzyme Kinetics

  • Km is the Michaelis constant; a measure of the enzyme's affinity for its substrate
  • Vmax is the maximum velocity of the enzyme reaction
  • Vo is initial velocity when [S] is changing

Enzyme Inhibition

  • Reversible inhibition: the inhibitor can bind and unbind the enzyme. This can be a competitive or uncompetitive process
  • Irreversible inhibition: the inhibitor forms a strong covalent bond with the enzyme, thereby permanently inactivating the enzyme

Chymotrypsin

  • Chymotrypsin is a serine protease that catalyzes the hydrolysis of peptide bonds, cleaving peptide bonds adjacent to aromatic amino acids. Its mechanism involves two phases: acylation and deacylation.
  • Key residues in the active site are essential for its catalytic function.

Transition state

  • The transition state is an intermediate state in a chemical reaction with the highest free energy.
  • The transition state between reactants and products is highly unstable
  • Enzymes stabilize the transition state and decrease the activation energy, catalyzing the reaction.

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