Podcast
Questions and Answers
What is one of the primary functions of enzymes in biochemical reactions?
What is one of the primary functions of enzymes in biochemical reactions?
- Consume reactants in the process
- Increase the temperature of the reaction
- Change the reaction products
- Decrease the activation energy required (correct)
Which class of enzymes is involved in oxidation-reduction reactions?
Which class of enzymes is involved in oxidation-reduction reactions?
- Lyases
- Hydrolases
- Transferases
- Oxidoreductases (correct)
What characterizes the specificity of enzymes?
What characterizes the specificity of enzymes?
- They can be easily synthesized by the body.
- They can catalyze multiple unrelated reactions.
- They have a precise enzyme-substrate interaction. (correct)
- They only work in high temperatures.
Why do some enzymes require co-factors for their activity?
Why do some enzymes require co-factors for their activity?
Which of the following statements about enzymes is incorrect?
Which of the following statements about enzymes is incorrect?
What model is commonly used to describe enzyme kinetics?
What model is commonly used to describe enzyme kinetics?
Chymotrypsin is often used to illustrate which concept in enzyme mechanisms?
Chymotrypsin is often used to illustrate which concept in enzyme mechanisms?
What is the role of metalloenzymes?
What is the role of metalloenzymes?
What is the role of enzymes in relation to activation energy?
What is the role of enzymes in relation to activation energy?
Which type of enzyme catalyzes the cleavage of chemical bonds without hydrolysis or oxidation?
Which type of enzyme catalyzes the cleavage of chemical bonds without hydrolysis or oxidation?
What happens to the rate of product formation over time during a reaction?
What happens to the rate of product formation over time during a reaction?
What is meant by the term 'transition state' in enzyme catalysis?
What is meant by the term 'transition state' in enzyme catalysis?
Which type of interaction significantly contributes to the stabilization of the transition state in enzymatic reactions?
Which type of interaction significantly contributes to the stabilization of the transition state in enzymatic reactions?
What best describes the relationship between an enzyme's structure and its substrate for effective catalysis?
What best describes the relationship between an enzyme's structure and its substrate for effective catalysis?
Which of the following statements is true regarding the role of enzymes in achieving equilibrium?
Which of the following statements is true regarding the role of enzymes in achieving equilibrium?
Which of the following best describes hydrolases?
Which of the following best describes hydrolases?
What is the significance of the Michaelis constant (Km) in enzyme kinetics?
What is the significance of the Michaelis constant (Km) in enzyme kinetics?
At which substrate concentration range does the initial velocity (V0) show a near-linear increase?
At which substrate concentration range does the initial velocity (V0) show a near-linear increase?
What occurs to the reaction rate when substrate concentration exceeds a certain threshold?
What occurs to the reaction rate when substrate concentration exceeds a certain threshold?
What is the rate-limiting step in enzyme-catalyzed reactions according to the Michaelis-Menten model?
What is the rate-limiting step in enzyme-catalyzed reactions according to the Michaelis-Menten model?
What occurs to the binding energy of interactions in the context of enzyme-substrate complex formation?
What occurs to the binding energy of interactions in the context of enzyme-substrate complex formation?
How does the initial velocity (V0) change in response to increases in substrate concentration at high levels of substrate?
How does the initial velocity (V0) change in response to increases in substrate concentration at high levels of substrate?
What assumption is made regarding product concentration at the beginning of a reaction in the Michaelis-Menten framework?
What assumption is made regarding product concentration at the beginning of a reaction in the Michaelis-Menten framework?
Why is the concentration of substrate ([S]) considered constant during the initial velocity measurement?
Why is the concentration of substrate ([S]) considered constant during the initial velocity measurement?
Flashcards
What are enzymes?
What are enzymes?
Enzymes are biological catalysts that increase the rate of chemical reactions without being consumed in the process.
What is enzyme specificity?
What is enzyme specificity?
Enzymes are highly specific, meaning they typically catalyze a single reaction or a set of closely related reactions.
What is catalytic power?
What is catalytic power?
Enzymes can accelerate chemical reactions by factors of up to a million or more.
What are cofactors?
What are cofactors?
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What do oxidoreductases do?
What do oxidoreductases do?
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What do transferases do?
What do transferases do?
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What do hydrolases do?
What do hydrolases do?
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What do lyases do?
What do lyases do?
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Transferases
Transferases
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Hydrolases
Hydrolases
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Lyases
Lyases
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Isomerases
Isomerases
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Ligases
Ligases
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Activation energy (DGâ§§)
Activation energy (DGâ§§)
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How enzymes lower activation energy
How enzymes lower activation energy
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Binding energy
Binding energy
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Initial Velocity at Low Substrate
Initial Velocity at Low Substrate
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Initial Velocity at High Substrate
Initial Velocity at High Substrate
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Rate-limiting step
Rate-limiting step
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Michaelis-Menten Plot
Michaelis-Menten Plot
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Michaelis Constant (Km)
Michaelis Constant (Km)
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Maximum Velocity (Vmax)
Maximum Velocity (Vmax)
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Michaelis-Menten Equation
Michaelis-Menten Equation
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Breakdown of ES Complex
Breakdown of ES Complex
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Study Notes
Enzymes
- Enzymes are biological catalysts that speed up chemical reactions in living organisms
- Enzymes are highly specific, catalyzing a single chemical reaction or a set of closely related reactions.
- Enzymes accelerate reactions by lowering the activation energy
- Enzymes are not consumed in the reaction
Enzyme properties
- Catalytic power: Enzymes greatly accelerate reaction rates, often by orders of magnitude faster than uncatalyzed reactions
- High specificity: Enzymes are highly specific for their substrates, meaning they only catalyze reactions involving particular substrates
- Enzymes are not changed by the reaction. They are not consumed in the reactions they catalyze
Enzyme mechanisms & categories
- Many enzymes require co-factors for activity
- Organic compounds: coenzymes (derived from vitamins)
- Metal ions: metalloenzymes
- Enzymes are classified into six major classes based on the type of reaction they catalyze.
- Oxidoreductases: Oxidation-reduction reactions (e.g., lactate dehydrogenase)
- Transferases: Group transfer reactions (e.g., nucleoside monophosphate kinase)
- Hydrolases: Hydrolysis reactions (e.g., chymotrypsin)
- Lyases: Cleavage of chemical bonds (e.g., fumarase)
- Isomerases: Isomerization reactions (e.g., triose phosphate isomerase)
- Ligases: Formation of C—C, C—O, C—S, or C—N bonds (e.g., aminoacyl-tRNA synthetase)
Michaelis Menten Equation
- The Michaelis-Menten equation describes the relationship between the initial rate of an enzyme-catalyzed reaction (Vo) and the substrate concentration ([S]).
- Kinetic parameters can be drawn from a Michaelis-Menten curve
Enzyme Kinetics
- Km is the Michaelis constant; a measure of the enzyme's affinity for its substrate
- Vmax is the maximum velocity of the enzyme reaction
- Vo is initial velocity when [S] is changing
Enzyme Inhibition
- Reversible inhibition: the inhibitor can bind and unbind the enzyme. This can be a competitive or uncompetitive process
- Irreversible inhibition: the inhibitor forms a strong covalent bond with the enzyme, thereby permanently inactivating the enzyme
Chymotrypsin
- Chymotrypsin is a serine protease that catalyzes the hydrolysis of peptide bonds, cleaving peptide bonds adjacent to aromatic amino acids. Its mechanism involves two phases: acylation and deacylation.
- Key residues in the active site are essential for its catalytic function.
Transition state
- The transition state is an intermediate state in a chemical reaction with the highest free energy.
- The transition state between reactants and products is highly unstable
- Enzymes stabilize the transition state and decrease the activation energy, catalyzing the reaction.
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