Biology Chapter: Proteins and Amino Acids Quiz

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Questions and Answers

What term is used to describe a chain of 3 amino acids?

  • Polypeptide
  • Oligopeptide
  • Dipeptide
  • Tripeptide (correct)

Which statement correctly describes the structure of proteins?

  • Proteins are classified solely based on their sequence of amino acids.
  • Proteins have a molecular weight greater than 10 kDa. (correct)
  • Proteins may consist of multiple polypeptide chains associated covalently.
  • Proteins are always formed from a single polypeptide chain.

What is the non-amino acid component of a conjugated protein referred to as?

  • Ligand
  • Coenzyme
  • Prosthetic group (correct)
  • Catalytic group

How is the sequence of amino acids in a peptide or protein displayed?

<p>From amino-terminal to carboxyl-terminal (A)</p> Signup and view all the answers

Which type of proteins contains permanently associated chemical components in addition to amino acids?

<p>Compound proteins (B)</p> Signup and view all the answers

What determines the function of a protein?

<p>The sequence of amino acids (C)</p> Signup and view all the answers

Which of the following is a key principle of macromolecules?

<p>Specific sequences of monomers provide information (C)</p> Signup and view all the answers

What role does water play in the structure and function of biomolecules?

<p>It promotes noncovalent interactions that influence recognition (D)</p> Signup and view all the answers

Which of the following amino acids is NOT part of the standard set of proteinogenic amino acids?

<p>Selenocysteine (C)</p> Signup and view all the answers

What type of bond links amino acids in proteins?

<p>Peptide bond (C)</p> Signup and view all the answers

Which of the following statements accurately describes the α carbon in amino acids?

<p>It has both an amino group and a carboxylic acid group (D)</p> Signup and view all the answers

What characteristic allows proteins to be distinguished from one another?

<p>Their chemical and functional properties (C)</p> Signup and view all the answers

How many common amino acids are utilized in protein synthesis?

<p>20 (C)</p> Signup and view all the answers

Which amino acids are primarily involved in the hydrophobic interactions in fibrous proteins?

<p>Ala, Val, Leu, Met (B)</p> Signup and view all the answers

What is the primary requirement for the hydroxylation of proline and lysine in collagen?

<p>Vitamin C (B)</p> Signup and view all the answers

What is the structural purpose of 4-hydroxyproline in collagen?

<p>To permit sharp twisting of the collagen helix (B)</p> Signup and view all the answers

What term describes proteins that consist of two or more different polypeptide chains?

<p>Oligomeric proteins (C)</p> Signup and view all the answers

What is the consequence of denaturation in proteins?

<p>Loss of three-dimensional structure (D)</p> Signup and view all the answers

Which type of protein provides oxygen storage and release in muscle cells?

<p>Myoglobin (D)</p> Signup and view all the answers

What causes the irreversible denaturation of proteins?

<p>Extreme pH levels (C)</p> Signup and view all the answers

What type of proteins includes myoglobin and hemoglobin?

<p>Globular proteins (D)</p> Signup and view all the answers

What are conditionally essential amino acids?

<p>Amino acids that the body can usually synthesize but may require dietary intake during certain life stages. (B)</p> Signup and view all the answers

Which amino acid is associated with the genetic disorder phenylketonuria?

<p>Phenylalanine (D)</p> Signup and view all the answers

Which disease is characterized by a misfolded brain protein?

<p>Alzheimer's disease (A)</p> Signup and view all the answers

What is the recommended dietary allowance (RDA) for protein for a healthy adult?

<p>0.8 to 1.0 g/kg/day (B)</p> Signup and view all the answers

Which statement about dietary protein sources is true?

<p>Vegetable proteins must be complemented with animal proteins to be nutrient-dense. (B)</p> Signup and view all the answers

What is the Protein Digestibility Corrected Amino Acid Score (PDCAAS) used for?

<p>To evaluate the quality of protein in food based on its amino acid profile and digestibility. (D)</p> Signup and view all the answers

What is the role of the cystic fibrosis transmembrane conductance regulator protein?

<p>It maintains the balance of salt and water on the lung surface. (D)</p> Signup and view all the answers

How much of the total daily energy intake should come from protein for adults?

<p>10 to 15% (B)</p> Signup and view all the answers

What is the role of histones in protein structure?

<p>They combine with DNA to form nucleoproteins. (D)</p> Signup and view all the answers

Which type of protein is known for its structural function in biological systems?

<p>Structural proteins (C)</p> Signup and view all the answers

What is true about the alpha helix structure in proteins?

<p>The R groups of each amino acid face outward. (D)</p> Signup and view all the answers

Which statement correctly describes the quaternary structure of proteins?

<p>It involves multiple polypeptide chains coming together. (C)</p> Signup and view all the answers

What characterizes the primary structure of proteins?

<p>It refers to the sequence of amino acids. (D)</p> Signup and view all the answers

Which of the following is a characteristic of proline in protein structure?

<p>It is often found in loop regions due to its rigid structure. (A)</p> Signup and view all the answers

What is the significance of noncovalent interactions in protein structure?

<p>They stabilize various levels of protein structure. (D)</p> Signup and view all the answers

Which type of derived proteins retains its amino acid composition and molecular conformation?

<p>Primary derived proteins (B)</p> Signup and view all the answers

What is a common feature of globulin proteins?

<p>They are insoluble and contribute to immune response. (B)</p> Signup and view all the answers

What is the role of proteases in protein processing?

<p>They catalyze the hydrolysis of proteins. (C)</p> Signup and view all the answers

What property most influences the solubility of amino acids in water?

<p>Electric charge of the R group (A)</p> Signup and view all the answers

What term describes the nonsuperimposable mirror images of amino acids?

<p>Enantiomers (B)</p> Signup and view all the answers

Which of the following amino acids is classified as having a nonpolar, aliphatic R group?

<p>Methionine (B)</p> Signup and view all the answers

Which amino acid has an aromatic hydroxyl group that can form hydrogen bonds?

<p>Tyrosine (A)</p> Signup and view all the answers

What characterizes the R groups of polar, uncharged amino acids?

<p>They contain functional groups that can form hydrogen bonds. (A)</p> Signup and view all the answers

Which of the following amino acids is considered acidic due to its negatively charged R group at pH 7.0?

<p>Glutamate (B)</p> Signup and view all the answers

What is the primary mechanism of polymerization for amino acids to form proteins?

<p>Condensation polymerization (C)</p> Signup and view all the answers

Which of the following amino acids can have an R group that is both positively charged and neutral at pH 7.0?

<p>Histidine (C)</p> Signup and view all the answers

Which amino acid can easily form a disulfide bond through oxidation?

<p>Cysteine (C)</p> Signup and view all the answers

What is the role of GABA, as described in the context of amino acids?

<p>It acts as an inhibitory neurotransmitter. (C)</p> Signup and view all the answers

Which amino acids have R groups classified as basic due to their positive charge at pH 7.0?

<p>Lysine and arginine (C)</p> Signup and view all the answers

Which of the following statements about glycine is true?

<p>It has the simplest structure among amino acids. (D)</p> Signup and view all the answers

The zwitterion form of amino acids occurs at which pH level?

<p>Neutral pH (C)</p> Signup and view all the answers

What is the characteristic feature of the α-carbon atom in amino acids?

<p>It serves as a chiral center. (D)</p> Signup and view all the answers

Flashcards

Biomolecules

Large molecules found in living organisms, composed of repeating units called monomers.

Proteins

A type of biomolecule composed of amino acids linked together.

Amino Acids

The basic building block of proteins. There are 20 standard amino acids.

Peptide Bond

The chemical bond that links amino acids together to form proteins.

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Peptide

A sequence of amino acids linked by peptide bonds.

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Amino Acid Sequence

The specific order of amino acids in a protein.

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Protein Structure

The three-dimensional shape of a protein.

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Protein Function

The ability of proteins to perform specific functions due to their unique structure.

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Oligopeptide

A chain of amino acids that is longer than a tripeptide, but shorter than a polypeptide. Typically contains between 3 and 10 amino acids.

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Polypeptide

A chain of amino acids that is longer than an oligopeptide. Typically contains more than 10 amino acids.

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Multisubunit Protein

Proteins composed of two or more polypeptide chains associated noncovalently.

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Conjugated Protein

Proteins that contain a non-amino acid component in addition to their amino acid sequence.

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Primary Derived Proteins

Proteins that remain structurally similar to their natural state, retaining their original amino acid composition and molecular conformation.

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Secondary Derived Proteins

Proteins formed as intermediates during the breakdown of larger proteins, such as during digestion.

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Alpha Helix

A protein with a spiral structure, stabilized by hydrogen bonds between amide hydrogens and carbonyl oxygens of peptide bonds.

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Beta Sheet

A protein with a zigzag structure formed by hydrogen bonds between polypeptide chains, often containing polar and small residues.

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Primary Structure

The linear sequence of amino acids in a protein, joined by covalent peptide bonds.

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Secondary Structure

The three-dimensional arrangement of the polypeptide backbone, including alpha helices and beta sheets.

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Tertiary Structure

The overall three-dimensional shape of a protein, determined by the interactions between amino acid side chains.

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Quaternary Structure

The arrangement of multiple polypeptide chains (subunits) in a protein complex.

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Catalytic Proteins (Enzymes)

Proteins that accelerate biochemical reactions by lowering activation energy

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Transport Proteins

Proteins that bind and transport molecules within the body.

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Myoglobin

A type of protein that binds to oxygen in muscle cells, delivering it to myocytes for energy production.

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Membrane Proteins

Proteins found embedded within cell membranes, playing roles in transport, signaling, and anchoring.

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Intrinsically Disordered Proteins

Proteins that lack a fixed three-dimensional structure and adopt different conformations based on their environment.

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Fibrous Proteins

Proteins with a long, extended structure, often providing structural support or forming fibers.

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Collagen

The most abundant protein in the human body, found in connective tissues, providing strength and flexibility.

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Protein Denaturation

The loss of a protein's three-dimensional structure, often leading to loss of function.

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Amyloidosis Diseases

A group of diseases caused by the accumulation of misfolded proteins in amyloid fibers, leading to tissue damage.

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What are the four groups attached to the α-carbon of an amino acid?

Amino acids have a central carbon atom, called the α-carbon, to which four different groups are attached: a carboxyl group (-COOH), an amino group (-NH2), a hydrogen atom (-H), and a side chain or R group (-R).

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What is the significance of the R groups in amino acids?

Differences in amino acid side chains (R groups) are responsible for the unique properties of each amino acid, such as their polarity, size, and charge.

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Why is the α-carbon a chiral center?

The α-carbon is a chiral center, meaning it has four different groups attached, making it asymmetric. This leads to two possible stereoisomers: L-isomers and D-isomers. Only L-isomers are typically found in proteins.

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What are enantiomers?

Enantiomers are stereoisomers that are nonsuperposable mirror images of each other. This means they have the same chemical formula, but their atoms are arranged differently in space.

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How are amino acids classified?

Amino acids are classified into five main groups based on the properties of their R groups. These groups include nonpolar aliphatic, aromatic, polar uncharged, positively charged (basic), and negatively charged (acidic).

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What are nonpolar aliphatic R groups?

Nonpolar, aliphatic R groups are hydrophobic (water-insoluble). They tend to cluster together inside proteins, contributing to protein structure stability through the hydrophobic effect.

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What are aromatic R groups?

Aromatic R groups contain aromatic rings, making them relatively nonpolar and hydrophobic. They contribute to the hydrophobic effect and can also participate in hydrogen bonding.

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What are polar uncharged R groups?

Polar, uncharged R groups are hydrophilic (water-soluble) due to their ability to form hydrogen bonds with water. This group includes serine, threonine, cysteine, asparagine, and glutamine.

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What are positively charged (basic) R groups?

Positively charged (basic) R groups have a net positive charge at pH 7.0. This group includes lysine, arginine, and histidine, each with a distinctive positively charged side chain.

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What are negatively charged (acidic) R groups?

Negatively charged (acidic) R groups have a net negative charge at pH 7.0. This group includes aspartate and glutamate, each with an extra carboxyl group.

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What is a zwitterion?

A zwitterion is an ion that contains both a positive and a negative charge. Amino acids exist as zwitterions at neutral pH, with the amino group protonated and the carboxyl group deprotonated.

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How do amino acids polymerize?

Amino acids are polymerized to form polypeptides and proteins through condensation reactions. This involves removing a water molecule to form a peptide bond between the carboxyl group of one amino acid and the amino group of another.

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What is the primary structure of a protein?

The sequence of amino acids in a protein is called the primary structure. This sequence determines the protein's shape and function.

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What are protein structures?

Proteins fold into three-dimensional structures, determined by interactions between amino acid side chains. These structures include secondary, tertiary, and quaternary structure.

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What are the functions of proteins?

Proteins are essential components of all living organisms. They participate in a wide range of biological processes, such as catalyzing reactions, transporting molecules, and providing structural support.

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Cystic Fibrosis

A genetic disorder caused by defects in the cystic fibrosis transmembrane conductance regulator (CFTR) protein, leading to impaired salt and water balance in the lungs and other tissues.

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Prion Diseases

A group of neurodegenerative diseases caused by the accumulation of misfolded proteins in the brain, leading to cell damage and dysfunction.

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Essential Amino Acids

Amino acids that the body cannot synthesize and must be obtained from the diet.

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Non-Essential Amino Acids

Amino acids that the body can synthesize from other molecules.

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Conditionally Essential Amino Acids

Amino acids that are normally non-essential but may become essential during certain periods of growth, development, or illness.

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Phenylketonuria (PKU)

A genetic disorder caused by a mutation in the phenylalanine hydroxylase enzyme, leading to the accumulation of phenylalanine in the body.

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Protein Digestibility Corrected Amino Acid Score (PDCAAS)

A measure of the protein's digestibility and its amino acid profile, indicating how efficiently the protein can be utilized by the body.

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Recommended Dietary Allowance (RDA) for Protein

The recommended daily intake of protein for adults, based on factors like age, activity level, and health status.

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Study Notes

Biomolecules

  • Biomolecules include proteins, carbohydrates, lipids, and nucleic acids.
  • Proteins are complex polymers constructed from amino acids.
  • Carbohydrates are crucial for energy storage and structural support.
  • Lipids are a diverse group of molecules, predominantly involved in energy storage and cell membrane structure.
  • Nucleic acids (DNA and RNA) carry genetic information.

Amino Acids

  • Proteins are composed of amino acids, of which there are 20 standard types in proteins.
  • The structure of each amino acid includes an amino group, a carboxyl group, and a variable side chain (R group).
  • Side chains (R groups) determine the chemical and physical properties of each amino acid.
  • Amino acids can be classified into groups (e.g., polar/hydrophobic, polar/uncharged, positively charged, negatively charged) based on these properties.
  • Some amino acids containing sulfur (e.g., cysteine) can form important stabilizing (disulfide) bonds in proteins.

Peptides and Proteins

  • Amino acids are linked together by peptide bonds to form peptides, short chains of amino acids, and proteins, which are longer chains of amino acids.
  • The sequence of amino acids determines the unique properties and function of a protein.
  • Proteins exhibit a wide range of functions, including catalysis, transport, structure, and immunity.
  • Proteins can be classified according to their functions (e.g., catalytic, transport, structural, genetic, storage) and physiochemical characteristics (e.g., simple, compound, and derived).

Protein Structure

  • Protein structure is described at four levels: primary, secondary, tertiary, and quaternary.
  • Primary structure is the linear sequence of amino acids.
  • Secondary structures are local folded patterns, such as alpha-helices and beta-sheets, stabilized by hydrogen bonds.
  • Tertiary structure is the three-dimensional arrangement of the entire polypeptide chain.
  • Quaternary structure describes the arrangement of multiple polypeptide chains in a protein complex.
  • Crucial interactions within the structure of proteins leading to their function include hydrophobic and hydrophilic interactions, hydrogen bonding, and van der Waals forces.
  • Some proteins contain permanently associated chemical components (prosthetic groups), in addition to the amino acids.
  • Incorrect protein folding can lead to disease.

Protein Denaturation

  • Denaturation is the process where proteins lose their three-dimensional structure, rendering them non-functional.
  • Denaturation can be caused by various factors, such as heat, extreme pH values, and certain chemicals.
  • Denaturation is often irreversible, influencing the protein's function and activity.

Essential vs. Nonessential Amino Acids

  • Amino acids are classified as essential or nonessential based on whether the body can synthesize them.
  • Essential amino acids must be obtained from the diet, while nonessential amino acids can be synthesized by the body.
  • Some nonessential amino acids can become conditionally essential under specific conditions (e.g., infancy, disease).

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