Biology Chapter on Enzymes and Protein Synthesis

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Questions and Answers

What occurs at the A-site during protein synthesis?

  • The formation of a glycosidic bond
  • The exit of tRNA from the ribosome
  • The attachment of the polypeptide to the ribosome
  • The release of the amino end of an amino acid (correct)

During gated transport, which of the following processes occurs?

  • Import into mitochondria
  • Translocation into the endoplasmic reticulum
  • Export from the cytoplasm
  • Import into the nucleus (correct)

Which transport process is involved in returning proteins from the Golgi to the ER?

  • Transmembrane transport
  • Passive diffusion
  • Vesicular transport (correct)
  • Gated transport

What is the pH level commonly maintained by lysosomes?

<p>Highly acidic, around 2.0 to 2.5 (B)</p> Signup and view all the answers

Which mechanism is used for import into mitochondria?

<p>Transmembrane transport (B)</p> Signup and view all the answers

What is one characteristic of lysosomal membrane proteins?

<p>They are heavily glycosylated (B)</p> Signup and view all the answers

What is a key feature of vesicular transport?

<p>It allows movement between membrane-enclosed organelles (C)</p> Signup and view all the answers

Which process is NOT a function of the endoplasmic reticulum?

<p>Cellular digestion (A)</p> Signup and view all the answers

What is the primary function of the telomerase enzyme in human cells?

<p>Extends telomeres using an RNA template (A)</p> Signup and view all the answers

What process occurs at the restriction point in the mammalian cell cycle?

<p>Commitment to DNA replication (B)</p> Signup and view all the answers

During which phase of meiosis do sister chromatids separate?

<p>Meiosis II (B)</p> Signup and view all the answers

What characterizes strand A in the replication fork?

<p>It is called the lagging strand (C)</p> Signup and view all the answers

Which of the following statements is NOT true about the functions of telomerase?

<p>It directly repairs damaged DNA (A)</p> Signup and view all the answers

In which phase of the cell cycle does the restriction point occur?

<p>Late G1 phase (D)</p> Signup and view all the answers

What happens during Meiosis I and Meiosis II?

<p>Homologous chromosomes separate in Meiosis I (C)</p> Signup and view all the answers

What is the direction of synthesis for the newly formed strand in DNA replication?

<p>From 5′ to 3′ (A)</p> Signup and view all the answers

Which enzyme synthesizes RNA using one of the DNA strands as a template?

<p>RNA polymerase (D)</p> Signup and view all the answers

What type of bond is formed between the carboxyl group of the amino acid and the tRNA during activation?

<p>Ester bond (B)</p> Signup and view all the answers

When reading mRNA during translation, in which direction does the ribosome move?

<p>5' to 3' (B)</p> Signup and view all the answers

Which end of the polypeptide chain is elongated during protein synthesis?

<p>C-terminus (C)</p> Signup and view all the answers

What occurs during the peptidyl transfer step in elongating ribosomes?

<p>The carboxyl end of the polypeptide is joined to the A-site tRNA. (A)</p> Signup and view all the answers

Which of the following accurately describes the role of aminoacyl-tRNA synthetase?

<p>It attaches amino acids to their corresponding tRNAs. (A)</p> Signup and view all the answers

What is the result of the high-energy bond formed during the attachment of the amino acid to the tRNA?

<p>It facilitates the peptide bond formation. (A)</p> Signup and view all the answers

During translation, the mRNA is read in sets of how many nucleotides?

<p>3 nucleotides (B)</p> Signup and view all the answers

Which statement is true regarding the inheritance of affected individuals in genetics?

<p>An affected woman almost always has an affected mother. (D)</p> Signup and view all the answers

What process is responsible for generating genetic variation in offspring?

<p>Crossing over and independent assortment. (B)</p> Signup and view all the answers

In the Hershey and Chase experiment, which isotope was used to label the viral protein?

<p>Sulfur-35 (B)</p> Signup and view all the answers

Which structures contain repetitive DNA and heterochromatin?

<p>Both telomeres and centromeres (D)</p> Signup and view all the answers

Which enzyme does not assist in unwinding DNA for replication?

<p>Primase (A)</p> Signup and view all the answers

What would be the mRNA sequence transcribed from the DNA template 5′ GTACCGTC 3′?

<p>5′ GACGGUAC 3′ (B)</p> Signup and view all the answers

How do nonsense mutations affect protein synthesis?

<p>They convert a codon for an amino acid into a stop codon. (B)</p> Signup and view all the answers

Which group of functional groups is present in the amino acid serine at neutral pH?

<p>Amino, carboxyl, and hydroxyl groups. (B)</p> Signup and view all the answers

What term describes a form of a gene with a slightly different sequence that encodes the same type of RNA or protein?

<p>allele (D)</p> Signup and view all the answers

What is the attachment point on the chromosome for spindle microtubules during cell division?

<p>centromere (A)</p> Signup and view all the answers

Diploid cells are characterized by having how many sets of chromosomes?

<p>two sets (A)</p> Signup and view all the answers

During which phase do microtubules attach to the kinetochores?

<p>prometaphase (B)</p> Signup and view all the answers

In a cross between a pure-breeding yellow plant and a pure-breeding green plant, what is the expected proportion of green-seeded plants in the offspring of a yellow offspring crossed with a green plant?

<p>50% (C)</p> Signup and view all the answers

Which of the following chromosome constitutions cannot lead to a viable human baby?

<p>YY (D)</p> Signup and view all the answers

If one parent has blood type AB and the other has blood type A, which blood types can their children possibly inherit?

<p>A, B, and AB only (A)</p> Signup and view all the answers

Which statement is inaccurate regarding X-linked recessive traits in humans?

<p>All sons of an affected woman are expected to be affected. (D)</p> Signup and view all the answers

Flashcards

What enzyme is depicted in the diagram?

RNA polymerase is an enzyme responsible for synthesizing RNA using a DNA template strand. This process is called transcription.

How does an aminoacyl-tRNA synthetase activate an amino acid?

Aminoacyl-tRNA synthetases are enzymes that attach specific amino acids to their corresponding tRNA molecules. This attachment forms a high-energy bond between the carboxyl group of the amino acid and the 3' or 2' hydroxyl group of the tRNA, preparing it for protein synthesis.

How does the ribosome read mRNA and build a polypeptide chain?

During translation, the ribosome reads the mRNA sequence from the 5' end to the 3' end. As it moves along the mRNA, it adds amino acids to the growing polypeptide chain, starting from the N-terminus and extending towards the C-terminus.

What happens during peptidyl transfer in translation?

When a ribosome has tRNAs bound to both the A and P sites, it is ready for peptidyl transfer. This involves the transfer of the polypeptide chain from the P-site tRNA to the amino acid attached to the A-site tRNA. Essentially, the carboxyl end of the polypeptide chain in the P-site joins with the amino group of the amino acid in the A-site.

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What is transcription and what enzyme is involved?

Transcription is the process of synthesizing RNA from a DNA template. RNA polymerase is the key enzyme involved in this process.

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What is tRNA and what is its role?

tRNA, or transfer RNA, is a type of RNA molecule that carries amino acids to the ribosome during protein synthesis. Each tRNA is specific for a particular amino acid.

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What is translation and where does it take place?

Translation is the process of converting genetic information from mRNA into a protein sequence. This process occurs at the ribosome, where tRNAs bring amino acids to the mRNA template.

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What are the A site and P site on the ribosome?

The A site, or aminoacyl site, is a binding site on the ribosome where the incoming aminoacyl-tRNA carrying the next amino acid to be added to the polypeptide chain binds. The P site, or peptidyl site, is where the tRNA bound to the growing polypeptide chain is located.

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Peptide Bond Formation

The process where the amino end of a newly synthesized amino acid on the A-site tRNA is joined to the carboxyl group of the polypeptide chain linked to the P-site tRNA, forming a peptide bond.

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Gated Transport

A type of cellular transport that involves the movement of molecules through protein channels or pores embedded in the membrane.

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Transmembrane Transport

A type of cellular transport that involves the movement of molecules across a membrane via protein translocators.

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Vesicular Transport

A type of cellular transport that involves the movement of molecules in membrane-bound vesicles.

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Nucleus

The compartment within the cell where ribosomes assemble and are exported back to the cytoplasm.

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Lysosomes

The main site of cellular digestion, maintaining a pH of 2.0 to 2.5, containing F-type ATPases that pump protons into the organelle, and having heavily glycosylated membrane proteins.

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ER to Golgi Transport

The process where proteins synthesized in the ER are transported to the Golgi apparatus.

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Golgi to ER Transport

The process where proteins are returned from the Golgi apparatus to the ER.

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What is Telomerase?

The telomerase enzyme is a specialized enzyme responsible for maintaining the length of telomeres at the ends of chromosomes. Telomeres act as protective caps, preventing DNA degradation and chromosome fusion during DNA replication. Telomerase uses its RNA component to act as a template for synthesizing DNA sequences at the telomeres, extending the chromosome ends and preventing their shortening with each replication cycle.

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What is the Lagging Strand?

The lagging strand is synthesized discontinuously during DNA replication because DNA polymerase can only add nucleotides in the 5' to 3' direction. As the replication fork moves along, the lagging strand template is exposed in fragments. DNA polymerase synthesizes short Okazaki fragments, which are later joined together by DNA ligase to form a continuous strand.

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What is The Restriction Point (R) in the Cell Cycle?

The restriction point (R) is a critical checkpoint reached in the G1 phase of the cell cycle in mammalian cells. At this point, a cell commits to entering the S phase (DNA replication) and completing the cell cycle. The restriction point ensures that the cell has grown sufficiently, has sufficient nutrients, and has received the necessary growth signals to proceed with DNA replication.

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How is Meiosis II similar to Mitosis?

Meiosis II is a division process in which sister chromatids separate, resulting in the formation of four haploid daughter cells, each containing one copy of each chromosome. This process is similar to mitosis, where sister chromatids are also separated, but it occurs in meiotic cells, which have undergone a previous round of chromosome pairing and recombination during Meiosis I.

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What is an allele?

A form of a gene that has a slightly different DNA sequence compared to other forms of the same gene, but codes for the same type of RNA or protein.

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What is the centromere?

The point on a chromosome where spindle microtubules attach during cell division.

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What are diploid cells?

Cells having two sets of chromosomes (one set from each parent).

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What happens during prometaphase?

The stage in mitosis when microtubules attach to kinetochores on chromosomes.

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Seed color inheritance

If a purebred yellow-seeded pea plant is crossed with a purebred green-seeded plant, and all offspring are yellow, what is the probability of getting a green-seeded offspring if one of these yellow offspring is crossed with a green-seeded plant?

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Which chromosome combination is not viable in humans?

A chromosome constitution that would not lead to a viable human baby.

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Autosomal recessive inheritance

If two parents with normal phenotypes have a child with an autosomal recessive trait, what is the likely genotype of the parents?

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Incorrect statement about X-linked recessive traits

A statement that is incorrect about X-linked recessive traits.

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X-linked Recessive Inheritance

A genetic condition where an affected woman almost always has an affected mother, and an affected man usually has a mother who carries the recessive allele. A phenotypically normal woman whose father was affected is likely to be heterozygous for the condition.

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Crossing Over

The process of exchange of genetic material between homologous chromosomes, resulting in new combinations of alleles. This process occurs during meiosis I.

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Independent Assortment

The physical separation of homologous chromosomes during meiosis I, leading to independent assortment of alleles from each parent.

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Hershey-Chase Experiment

The use of radioactive isotopes to label DNA or protein to track their movement during viral infection. Hershey and Chase used sulfur-35 to label protein, and phosphorus-32 to label DNA.

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Telomeres

Regions of DNA that are highly repetitive and are found at the ends of chromosomes. They protect the ends of chromosomes from degradation and promote stability.

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Centromeres

Regions of DNA that are highly repetitive and are found at the constricted region of chromosomes. They serve as the attachment point for spindle fibers during cell division.

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DNA Unwinding

The unwinding of the DNA helix, separating the two strands to allow for replication. It is aided by helicase, single-stranded binding proteins, and topoisomerase.

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Nonsense Mutation

A type of mutation that changes a codon for an amino acid into a stop codon, resulting in a truncated and often non-functional protein.

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Study Notes

Enzyme Depicted in Schematic Drawing

  • The enzyme depicted in the schematic drawing is RNA polymerase
  • RNA polymerase synthesizes RNA using one strand of DNA as a template

Aminoacyl-tRNA Synthetase

  • Aminoacyl-tRNA synthetase activates amino acids by attaching them to tRNA(s)
  • The linkage between the amino acid and tRNA occurs between the carboxyl group of the amino acid and the 3' or 2' hydroxyl group of the tRNA
  • The amino group of the amino acid acts as the attacking group in peptide bond formation

mRNA Reading and Polypeptide Synthesis

  • mRNA is read from 5' to 3' on the ribosome
  • Polypeptide synthesis occurs from the N-terminus to the C-terminus

Elongating Ribosome

  • An elongating ribosome bound to appropriate tRNAs in the A and P sites is ready for peptidyl transfer
  • The carboxyl end of the polypeptide chain is released from the P-site tRNA and joined to the free amino group of the amino acid linked to the A-site tRNA

Transport Processes

  • Import into nucleus (G)
  • Export from nucleus (G)
  • Import into mitochondria (T)

Lysosomes

  • Lysosomes are the principal site of cellular digestion
  • Lysosomes maintain a pH of about 2.0 to 2.5
  • Lysosomes contain F-type ATPases that pump protons into the organelles

Telomerase Enzyme

  • Telomerase has an RNA component
  • Telomerase extends the telomeres using its RNA component as a template
  • Telomerase polymerizes DNA sequences at chromosome ends to solve the "end-replication" problem

Replication Fork

  • The strand labeled A in the replication fork schematic is called the lagging strand

Restriction Point

  • The restriction point in the mammalian cell cycle is represented by time point B

Meiosis Division Similar to Mitosis

  • Meiosis II is more similar to mitosis
  • Sister chromatids separate in meiosis II

Gene Form

  • A form of a gene with a slightly different sequence but encoding the same RNA or protein is called an allele

Chromosome Attachment Point

  • The attachment point of spindle microtubules on the chromosome is the centromere

Diploid Cells

  • Diploid cells have two sets of chromosomes

Prometaphase

  • Microtubules attach to the kinetochores during prometaphase

Mendelian Genetics

  • In Mendel's peas, yellow seeds are dominant to green
  • If a yellow pea plant (homozygous dominant) is crossed with a green pea plant (homozygous recessive), all offspring will be yellow
  • Breeding a yellow offspring (heterozygous) with a green plant gives a 50% chance of green offspring

Chromosome Constitutions

  • XXY, XXX, and XYY are all viable human chromosome constitutions

Codominance and Blood Types

  • In humans, blood types A and B are codominant to each other and each is dominant to O
  • Offspring from an AB and A blood type parent can result in A, B, and AB blood types

X-linked Recessive Traits in Humans

  • An affected man often has phenotypically normal parents
  • All the sons of an affected women will be expected to be affected.
  • An affected man usually has a mother who carries the recessive allele
  • A phenotypically normal woman whose father was affected is likely to be heterozygous for the condition

Recombination

  • Recombination occurs through crossing over and independent assortment

Hershey-Chase Experiment

  • Hershey and Chase used 35S to label the viral protein

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