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Questions and Answers
What distinguishes selenocysteine from cysteine?
What distinguishes selenocysteine from cysteine?
- Amino acid with no specific function
- Contains selenium instead of sulfur (correct)
- Derived from cysteine instead of serine
- Contains sulfur instead of selenium
Which amino acids serve as neurotransmitters or their precursors?
Which amino acids serve as neurotransmitters or their precursors?
- All amino acids without exception
- Only L-α-amino acids
- Some L-α-amino acids and their derivatives (correct)
- Only non-protein amino acids
What role do peptides play in biological processes?
What role do peptides play in biological processes?
- Act as hormones or neuromodulators (correct)
- Exclusively as energy sources
- Only as structural elements in proteins
- Only as components of cell membranes
What defines the N-terminus of a polypeptide chain?
What defines the N-terminus of a polypeptide chain?
How are peptide bonds formed between amino acids?
How are peptide bonds formed between amino acids?
Which amino acids have non-polar side chains?
Which amino acids have non-polar side chains?
What is true about amino acids with uncharged polar side chains?
What is true about amino acids with uncharged polar side chains?
What characterizes amino acids with basic side chains?
What characterizes amino acids with basic side chains?
Which functional group is characteristic of cysteine?
Which functional group is characteristic of cysteine?
What is the charge of aspartic acid's side chain at physiologic pH?
What is the charge of aspartic acid's side chain at physiologic pH?
What is the role of the imidazole group in histidine?
What is the role of the imidazole group in histidine?
Proline is unique among amino acids because it contains:
Proline is unique among amino acids because it contains:
Which amino acids can form disulfide bonds?
Which amino acids can form disulfide bonds?
Which of the following amino acids is classified as both essential and semi-essential?
Which of the following amino acids is classified as both essential and semi-essential?
Which amino acid is exclusively ketogenic?
Which amino acid is exclusively ketogenic?
What is the primary function of glycogenic amino acids?
What is the primary function of glycogenic amino acids?
Which of the following is NOT a non-essential amino acid?
Which of the following is NOT a non-essential amino acid?
What distinguishes chiral amino acids from non-chiral amino acids?
What distinguishes chiral amino acids from non-chiral amino acids?
Which of the following amino acids is NOT categorized as glycogenic?
Which of the following amino acids is NOT categorized as glycogenic?
Which amino acid is derived from phenylalanine?
Which amino acid is derived from phenylalanine?
Which classification includes amino acids that can form both glucose and fat?
Which classification includes amino acids that can form both glucose and fat?
What is the configuration of all amino acids found in proteins?
What is the configuration of all amino acids found in proteins?
Which property is common to most amino acids regarding their solubility?
Which property is common to most amino acids regarding their solubility?
Which amino acid is an exception regarding optical isomers?
Which amino acid is an exception regarding optical isomers?
What is a characteristic of amino acids being ampholytes?
What is a characteristic of amino acids being ampholytes?
Under what pH condition does an amino acid exist as a cation?
Under what pH condition does an amino acid exist as a cation?
Which of the following amino acids is a derivative of common amino acids found in collagen?
Which of the following amino acids is a derivative of common amino acids found in collagen?
Which uncommon amino acid is associated with blood clotting proteins?
Which uncommon amino acid is associated with blood clotting proteins?
What distinguishes selenocysteine from other amino acids?
What distinguishes selenocysteine from other amino acids?
What is the basic structural feature common to all proteins?
What is the basic structural feature common to all proteins?
Which of the following correctly describes the electrical charge of amino acids at physiological pH?
Which of the following correctly describes the electrical charge of amino acids at physiological pH?
Which of the following amino acids is represented by the one-letter abbreviation 'H'?
Which of the following amino acids is represented by the one-letter abbreviation 'H'?
What is NOT one of the classifications of amino acids mentioned?
What is NOT one of the classifications of amino acids mentioned?
Which of the following correctly lists an example of a contractile protein?
Which of the following correctly lists an example of a contractile protein?
What role do the side chains of amino acids play in proteins?
What role do the side chains of amino acids play in proteins?
Which amino acid is represented by the 3-letter abbreviation 'Gly'?
Which amino acid is represented by the 3-letter abbreviation 'Gly'?
Which of these statements about blood proteins is incorrect?
Which of these statements about blood proteins is incorrect?
Flashcards
What are proteins and their importance?
What are proteins and their importance?
Proteins are the most abundant and diverse molecules in living organisms, playing crucial roles in virtually every life process.
What is the basic structure of proteins?
What is the basic structure of proteins?
Proteins are linear polymers made up of amino acids linked together in a specific sequence.
What are amino acids?
What are amino acids?
Amino acids are organic molecules that contain both an amino group (-NH2) and a carboxyl group (-COOH).
What is the structure of an amino acid?
What is the structure of an amino acid?
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How do amino acids behave at physiological pH?
How do amino acids behave at physiological pH?
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How are amino acids classified based on their side chains?
How are amino acids classified based on their side chains?
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How are amino acids abbreviated?
How are amino acids abbreviated?
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Why is the classification of amino acids based on side chains important?
Why is the classification of amino acids based on side chains important?
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What are basic amino acids?
What are basic amino acids?
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List the basic amino acids.
List the basic amino acids.
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What makes lysine a basic amino acid?
What makes lysine a basic amino acid?
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Why is arginine classified as a basic amino acid?
Why is arginine classified as a basic amino acid?
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What makes histidine a unique basic amino acid?
What makes histidine a unique basic amino acid?
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How do basic amino acids affect protein behavior?
How do basic amino acids affect protein behavior?
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How do basic amino acids contribute to enzymatic activity?
How do basic amino acids contribute to enzymatic activity?
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What is the overall impact of basic amino acids on protein structure and function?
What is the overall impact of basic amino acids on protein structure and function?
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What are essential amino acids?
What are essential amino acids?
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What are semi-essential amino acids?
What are semi-essential amino acids?
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What are non-essential amino acids?
What are non-essential amino acids?
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What are glycogenic amino acids?
What are glycogenic amino acids?
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What are ketogenic amino acids?
What are ketogenic amino acids?
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What are glycogenic and ketogenic amino acids?
What are glycogenic and ketogenic amino acids?
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What are "D" and "L" forms of amino acids?
What are "D" and "L" forms of amino acids?
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Why is Glycine special?
Why is Glycine special?
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What makes selenocysteine unique?
What makes selenocysteine unique?
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How is selenocysteine synthesized in cells?
How is selenocysteine synthesized in cells?
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What are non-protein amino acids?
What are non-protein amino acids?
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How do amino acids contribute to protein synthesis?
How do amino acids contribute to protein synthesis?
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What other functions do amino acids have besides protein synthesis?
What other functions do amino acids have besides protein synthesis?
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Solubility of Amino Acids
Solubility of Amino Acids
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Melting Points of Amino Acids
Melting Points of Amino Acids
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Optical Isomers in Amino Acids
Optical Isomers in Amino Acids
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Amino Acids as Ampholytes
Amino Acids as Ampholytes
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Zwitter Ions in Amino Acids
Zwitter Ions in Amino Acids
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Uncommon Amino Acids: Hydroxyproline & Hydroxylysine
Uncommon Amino Acids: Hydroxyproline & Hydroxylysine
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Uncommon Amino Acid: γ-Carboxyglutamate
Uncommon Amino Acid: γ-Carboxyglutamate
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Uncommon Amino Acid: Desmosine
Uncommon Amino Acid: Desmosine
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Study Notes
Biochemistry Lecture 3
- Proteins: Abundant and diverse molecules in living systems; essential for all life processes; composed of amino acids.
- Example Proteins: Enzymes, polypeptide hormones, muscle protein myosin, collagen, hemoglobin, plasma albumin, immunoglobulins.
- Protein Structure: Linear polymers of amino acids.
Amino Acids
- Structure: Organic compounds with two functional groups: amino group (-NH2) which is basic, and carboxyl group (-COOH) which is acidic.
- General Structure: Central carbon atom (α-carbon) bonded to an amino group, a carboxyl group, a hydrogen atom, and a variable side chain ("R-group").
- Proline Exception: Proline's α-carbon is part of a ring structure, lacking a primary amino group.
Amino Acid Structure and Properties
- At Physiological pH (approx. pH 7.4): Carboxyl group is dissociated as a carboxylate ion (-COO-), and the amino group is protonated (-NH3+).
- Properties: These dictate the amino acid's role in proteins. Classification is based on properties of side chains.
Amino Acid Classification
- Based on structure:
- Non-polar side chains (hydrophobic): Glycine, alanine, valine, leucine, isoleucine, phenylalanine, tryptophan, methionine, proline; side chains cluster in protein interior.
- Uncharged polar side chains (hydrophilic): Serine, threonine, cysteine, tyrosine, asparagine and glutamine; these form hydrogen bonds with water; cysteine can form disulfide bonds.
- Acidic side chains: Aspartic and glutamic acids; fully ionized as negatively charged carboxylate ions at physiological pH.
- Basic side chains: Lysine, arginine, and histidine; their side chains are positively charged at physiological pH; lysine has a second amino group; arginine has a guanidine group; histidine has an imidazole group.
Nutritional Classification of Amino Acids
- Essential amino acids: Cannot be formed in the body and must be obtained through the diet; crucial for growth, health, and protein synthesis (valine, leucine, isoleucine, phenylalanine, tryptophan, methionine, lysine, histidine, threonine, arginine).
- Semi-essential amino acids: Body can produce them, but not in quantities needed by growing children, must be supplied through diet (arginine and histidine).
- Non-essential amino acids: Body can produce them in sufficient quantities for adults and children (alanine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, proline, serine, tyrosine). Tyrosine is produced from phenylalanine.
Metabolic Fate of Amino Acids
- Glycogenic amino acids: Their carbon skeletons are degraded to pyruvate, α-ketoglutarate, succinyl CoA, fumarate, and oxaloacetate, subsequently converted to glucose. Include alanine, cysteine, glycine, Arginine, glutamine, isoleucine, tyrosine, etc.
- Ketogenic amino acids: Their carbon skeletons form precursors for fat synthesis; examples include leucine, and lysine.
- Glycogenic and ketogenic amino acids: Some amino acids serve as precursors for both glucose and fat (isoleucine, phenylalanine, tryptophan, tyrosine, and threonine).
Other Important Amino Acids
- 4-Hydroxyproline and 5-Hydroxylysine: Modified forms of proline and lysine, found in plant cell wall proteins and collagen.
- γ-Carboxyglutamate: Found in blood clotting protein prothrombin and proteins binding Ca2+.
- Desmosine: A derivative of four lysine residues, found in elastin.
- Selenocysteine: A 21st amino acid; derived from serine, and found in few known proteins.
- Ornithine and citrulline: Not protein constituents but are involved in various metabolic pathways.
Function of Amino Acids
- Protein synthesis: Providing monomers for polypeptide chains.
- Neurotransmitters and hormones: Acting as neurotransmitters, mediators, or hormones, or precursors to them.
- Precursors for metabolites: Forming precursors for glucose, porphyrins, purines, pyrimidines, and urea.
- Components of other molecules: Participating in lipid synthesis (serine in phospholipids, glycine in bile salts) and in polypeptide antibiotics.
Peptide Chain
- Peptides: Short chains of amino acids linked by peptide bonds.
- Polypeptides: Long chains of amino acids; N-terminus is the starting point, and C-terminus is the ending point.
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