Biochemistry Quiz on Amino Acids and Peptides

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Questions and Answers

What distinguishes selenocysteine from cysteine?

  • Amino acid with no specific function
  • Contains selenium instead of sulfur (correct)
  • Derived from cysteine instead of serine
  • Contains sulfur instead of selenium

Which amino acids serve as neurotransmitters or their precursors?

  • All amino acids without exception
  • Only L-α-amino acids
  • Some L-α-amino acids and their derivatives (correct)
  • Only non-protein amino acids

What role do peptides play in biological processes?

  • Act as hormones or neuromodulators (correct)
  • Exclusively as energy sources
  • Only as structural elements in proteins
  • Only as components of cell membranes

What defines the N-terminus of a polypeptide chain?

<p>The start with a free amino group (C)</p> Signup and view all the answers

How are peptide bonds formed between amino acids?

<p>By reacting the carboxyl group of one amino acid with the amine group of another (B)</p> Signup and view all the answers

Which amino acids have non-polar side chains?

<p>Glycine, Tryptophan, Methionine (B)</p> Signup and view all the answers

What is true about amino acids with uncharged polar side chains?

<p>They contain hydroxyl or amide groups that can form hydrogen bonds with water. (A)</p> Signup and view all the answers

What characterizes amino acids with basic side chains?

<p>They include amino acids like Lysine, Arginine, and Histidine. (C)</p> Signup and view all the answers

Which functional group is characteristic of cysteine?

<p>Sulfhydryl group (C)</p> Signup and view all the answers

What is the charge of aspartic acid's side chain at physiologic pH?

<p>Negatively charged carboxylate group (A)</p> Signup and view all the answers

What is the role of the imidazole group in histidine?

<p>It acts as a proton donor/acceptor in enzyme reactions. (B)</p> Signup and view all the answers

Proline is unique among amino acids because it contains:

<p>A ring structure formed between its side chain and α-amino group (A)</p> Signup and view all the answers

Which amino acids can form disulfide bonds?

<p>Cysteine only (C)</p> Signup and view all the answers

Which of the following amino acids is classified as both essential and semi-essential?

<p>Arginine (A), Histidine (C)</p> Signup and view all the answers

Which amino acid is exclusively ketogenic?

<p>Leucine (A), Lysine (D)</p> Signup and view all the answers

What is the primary function of glycogenic amino acids?

<p>To serve as glucose precursors (C)</p> Signup and view all the answers

Which of the following is NOT a non-essential amino acid?

<p>Leucine (B)</p> Signup and view all the answers

What distinguishes chiral amino acids from non-chiral amino acids?

<p>The orientation of the α-carbon atom (B)</p> Signup and view all the answers

Which of the following amino acids is NOT categorized as glycogenic?

<p>Lysine (C)</p> Signup and view all the answers

Which amino acid is derived from phenylalanine?

<p>Tyrosine (C)</p> Signup and view all the answers

Which classification includes amino acids that can form both glucose and fat?

<p>Glycogenic and ketogenic amino acids (C)</p> Signup and view all the answers

What is the configuration of all amino acids found in proteins?

<p>L-configuration (D)</p> Signup and view all the answers

Which property is common to most amino acids regarding their solubility?

<p>Soluble in water (D)</p> Signup and view all the answers

Which amino acid is an exception regarding optical isomers?

<p>Glycine (B)</p> Signup and view all the answers

What is a characteristic of amino acids being ampholytes?

<p>They contain both acidic and basic groups. (B)</p> Signup and view all the answers

Under what pH condition does an amino acid exist as a cation?

<p>Acidic pH (C)</p> Signup and view all the answers

Which of the following amino acids is a derivative of common amino acids found in collagen?

<p>4-hydroxyproline (A)</p> Signup and view all the answers

Which uncommon amino acid is associated with blood clotting proteins?

<p>Gamma-carboxyglutamate (A)</p> Signup and view all the answers

What distinguishes selenocysteine from other amino acids?

<p>It is incorporated during protein synthesis. (C)</p> Signup and view all the answers

What is the basic structural feature common to all proteins?

<p>They are linear polymers of amino acids. (C)</p> Signup and view all the answers

Which of the following correctly describes the electrical charge of amino acids at physiological pH?

<p>The amino group is protonated and the carboxyl group is dissociated. (D)</p> Signup and view all the answers

Which of the following amino acids is represented by the one-letter abbreviation 'H'?

<p>Histidine (D)</p> Signup and view all the answers

What is NOT one of the classifications of amino acids mentioned?

<p>Amino acids with basic side chains (C)</p> Signup and view all the answers

Which of the following correctly lists an example of a contractile protein?

<p>Myosin (C)</p> Signup and view all the answers

What role do the side chains of amino acids play in proteins?

<p>They dictate the amino acid's role in the protein. (B)</p> Signup and view all the answers

Which amino acid is represented by the 3-letter abbreviation 'Gly'?

<p>Glycine (C)</p> Signup and view all the answers

Which of these statements about blood proteins is incorrect?

<p>Immunoglobulins are involved in oxygen transport. (B)</p> Signup and view all the answers

Flashcards

What are proteins and their importance?

Proteins are the most abundant and diverse molecules in living organisms, playing crucial roles in virtually every life process.

What is the basic structure of proteins?

Proteins are linear polymers made up of amino acids linked together in a specific sequence.

What are amino acids?

Amino acids are organic molecules that contain both an amino group (-NH2) and a carboxyl group (-COOH).

What is the structure of an amino acid?

Each amino acid (except proline) has a central carbon atom (α-carbon) bonded to an amino group, a carboxyl group, a hydrogen atom, and a unique side chain (R-group).

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How do amino acids behave at physiological pH?

At a pH of 7.4 (physiological pH), the carboxyl group loses a proton (H+) to become negatively charged (-COO-), while the amino group gains a proton to become positively charged (-NH3+).

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How are amino acids classified based on their side chains?

Amino acids are classified based on the properties of their side chains, which determine their role in a protein. Amino acids can be classified as non-polar, uncharged polar, acidic, or basic.

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How are amino acids abbreviated?

Each amino acid has a unique 3-letter and 1-letter abbreviation.

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Why is the classification of amino acids based on side chains important?

The properties of the side chains are crucial in determining a protein's structure and function, influencing interactions between amino acids and how the protein folds.

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What are basic amino acids?

These amino acids have R groups that contain a basic amine group, making them positively charged in solution. They play important roles in protein structure and function.

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List the basic amino acids.

Lysine, Arginine, and Histidine are the three amino acids classified as basic.

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What makes lysine a basic amino acid?

Lysine has a second amino group at the ε position on its R chain, making it a strong base.

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Why is arginine classified as a basic amino acid?

Arginine's R chain contains a positively charged guanidinium group, which is a strong base.

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What makes histidine a unique basic amino acid?

Histidine has a positively charged imidazole group that can readily donate or accept protons, making it an important part of enzyme active sites.

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How do basic amino acids affect protein behavior?

The positive charge of basic amino acids contributes to their hydrophilicity, making them more likely to be found on the surface of proteins interacting with the aqueous environment.

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How do basic amino acids contribute to enzymatic activity?

Basic amino acids play critical roles in enzymatic reactions. They can act as proton donors or acceptors within the enzyme's catalytic site, aiding in the conversion of substrates to products.

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What is the overall impact of basic amino acids on protein structure and function?

The presence of basic amino acids influences the overall charge and shape of proteins, influencing their interactions with other molecules and their function within the cell.

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What are essential amino acids?

These essential amino acids are like building blocks for essential functions in the body, but your body can't create them on its own, so you need to get them from your diet.

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What are semi-essential amino acids?

These semi-essential amino acids are kind of like 'helpers' for growth and protein synthesis. Adults can create some of them, but kids need more than their bodies make so they need to get them from food.

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What are non-essential amino acids?

These non-essential amino acids are like handy tools that your body already has, making them for its own use.

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What are glycogenic amino acids?

Glycogenic amino acids are like building blocks that can directly turn into sugars to give your body energy.

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What are ketogenic amino acids?

Ketogenic amino acids are like special ingredients that can turn into fat for long-term energy storage.

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What are glycogenic and ketogenic amino acids?

These special amino acids are like multi-purpose ingredients, able to turn into both energy and fat, depending on your body's needs.

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What are "D" and "L" forms of amino acids?

All amino acids have a central carbon atom that's like a crossroads, and it can be twisted in two different ways. Think of them like mirror images of each other.

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Why is Glycine special?

Glycine is a unique amino acid with no twist in its central carbon, making it different from all other amino acids.

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What makes selenocysteine unique?

Selenocysteine is an unusual amino acid. It's incorporated into proteins during translation, not directly from the genetic code. Instead, it's added later, using a specific tRNA.

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How is selenocysteine synthesized in cells?

It's the only amino acid synthesized directly from serine. It then undergoes a complex series of reactions involving a special enzyme and tRNA.

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What are non-protein amino acids?

They are not incorporated into proteins but have diverse functions within the cell. Examples include ornithine and citrulline, which are involved in the urea cycle.

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How do amino acids contribute to protein synthesis?

Amino acids are like LEGO bricks for building proteins. They form long chains called polypeptides, which can fold into complex structures.

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What other functions do amino acids have besides protein synthesis?

Amino acids are multi-talented molecules. While they build proteins, they also play roles in various metabolic processes. For instance, they are precursors for crucial molecules like hormones and neurotransmitters.

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Solubility of Amino Acids

Most amino acids are readily dissolved in water but struggle to dissolve in organic solvents.

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Melting Points of Amino Acids

Amino acids have high melting points, often above 200°C, because they form strong bonds.

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Optical Isomers in Amino Acids

All amino acids, except glycine, have a mirror-image form due to the presence of a carbon atom with four different groups attached.

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Amino Acids as Ampholytes

Amino acids act as ampholytes because they can both accept and donate protons (H+) due to their acidic (-COOH) and basic (-NH2) groups.

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Zwitter Ions in Amino Acids

Zwitter ions, also called dipolar ions, have both positive and negative charges within the same molecule. Amino acids are commonly found in this form.

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Uncommon Amino Acids: Hydroxyproline & Hydroxylysine

4-Hydroxyproline and 5-hydroxylysine are found in plant cell walls and collagen, respectively. They're created by modifying existing amino acids.

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Uncommon Amino Acid: γ-Carboxyglutamate

γ-Carboxyglutamate is essential for blood clotting and other functions that bind calcium ions (Ca2+). It's found in proteins like prothrombin.

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Uncommon Amino Acid: Desmosine

Desmosine, a molecule derived from four lysine residues, provides elasticity to proteins like elastin, found in tissues.

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Study Notes

Biochemistry Lecture 3

  • Proteins: Abundant and diverse molecules in living systems; essential for all life processes; composed of amino acids.
  • Example Proteins: Enzymes, polypeptide hormones, muscle protein myosin, collagen, hemoglobin, plasma albumin, immunoglobulins.
  • Protein Structure: Linear polymers of amino acids.

Amino Acids

  • Structure: Organic compounds with two functional groups: amino group (-NH2) which is basic, and carboxyl group (-COOH) which is acidic.
  • General Structure: Central carbon atom (α-carbon) bonded to an amino group, a carboxyl group, a hydrogen atom, and a variable side chain ("R-group").
  • Proline Exception: Proline's α-carbon is part of a ring structure, lacking a primary amino group.

Amino Acid Structure and Properties

  • At Physiological pH (approx. pH 7.4): Carboxyl group is dissociated as a carboxylate ion (-COO-), and the amino group is protonated (-NH3+).
  • Properties: These dictate the amino acid's role in proteins. Classification is based on properties of side chains.

Amino Acid Classification

  • Based on structure:
    • Non-polar side chains (hydrophobic): Glycine, alanine, valine, leucine, isoleucine, phenylalanine, tryptophan, methionine, proline; side chains cluster in protein interior.
    • Uncharged polar side chains (hydrophilic): Serine, threonine, cysteine, tyrosine, asparagine and glutamine; these form hydrogen bonds with water; cysteine can form disulfide bonds.
    • Acidic side chains: Aspartic and glutamic acids; fully ionized as negatively charged carboxylate ions at physiological pH.
    • Basic side chains: Lysine, arginine, and histidine; their side chains are positively charged at physiological pH; lysine has a second amino group; arginine has a guanidine group; histidine has an imidazole group.

Nutritional Classification of Amino Acids

  • Essential amino acids: Cannot be formed in the body and must be obtained through the diet; crucial for growth, health, and protein synthesis (valine, leucine, isoleucine, phenylalanine, tryptophan, methionine, lysine, histidine, threonine, arginine).
  • Semi-essential amino acids: Body can produce them, but not in quantities needed by growing children, must be supplied through diet (arginine and histidine).
  • Non-essential amino acids: Body can produce them in sufficient quantities for adults and children (alanine, asparagine, aspartic acid, cysteine, glutamic acid, glutamine, glycine, proline, serine, tyrosine). Tyrosine is produced from phenylalanine.

Metabolic Fate of Amino Acids

  • Glycogenic amino acids: Their carbon skeletons are degraded to pyruvate, α-ketoglutarate, succinyl CoA, fumarate, and oxaloacetate, subsequently converted to glucose. Include alanine, cysteine, glycine, Arginine, glutamine, isoleucine, tyrosine, etc.
  • Ketogenic amino acids: Their carbon skeletons form precursors for fat synthesis; examples include leucine, and lysine.
  • Glycogenic and ketogenic amino acids: Some amino acids serve as precursors for both glucose and fat (isoleucine, phenylalanine, tryptophan, tyrosine, and threonine).

Other Important Amino Acids

  • 4-Hydroxyproline and 5-Hydroxylysine: Modified forms of proline and lysine, found in plant cell wall proteins and collagen.
  • γ-Carboxyglutamate: Found in blood clotting protein prothrombin and proteins binding Ca2+.
  • Desmosine: A derivative of four lysine residues, found in elastin.
  • Selenocysteine: A 21st amino acid; derived from serine, and found in few known proteins.
  • Ornithine and citrulline: Not protein constituents but are involved in various metabolic pathways.

Function of Amino Acids

  • Protein synthesis: Providing monomers for polypeptide chains.
  • Neurotransmitters and hormones: Acting as neurotransmitters, mediators, or hormones, or precursors to them.
  • Precursors for metabolites: Forming precursors for glucose, porphyrins, purines, pyrimidines, and urea.
  • Components of other molecules: Participating in lipid synthesis (serine in phospholipids, glycine in bile salts) and in polypeptide antibiotics.

Peptide Chain

  • Peptides: Short chains of amino acids linked by peptide bonds.
  • Polypeptides: Long chains of amino acids; N-terminus is the starting point, and C-terminus is the ending point.

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