Biochemistry Key Concepts

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Questions and Answers

Which of following bonds don't participate in formation of tertiary structure of proteins?

  • hydrophobic interactions
  • Ionic bond
  • disulfide bond
  • Coordination bond (correct)
  • Hydrogen bond

Casein concerns to a class of:

  • chromoproteins
  • lipoproteins
  • phosphoproteins (correct)
  • glycoproteins
  • metalloproteins

The amino acid which is not meeting in structure of a molecule of proteins:

  • proline
  • glutamic acid
  • beta-alanine (correct)
  • lysine
  • phenylalanine

Show the iminoacid:

<p>proline (C)</p> Signup and view all the answers

What amino acid contains sulfur:

<p>methionine (A)</p> Signup and view all the answers

Quaternary structure of a molecule of hemoglobin is described by the formula:

<p>alfa2beta2 (E)</p> Signup and view all the answers

Basic simple proteins of nucleoproteins of humans are:

<p>histones (A)</p> Signup and view all the answers

Function of nucleic acids is:

<p>preservation and transfer of the genetic information, synthesis of proteins (C)</p> Signup and view all the answers

The proteins which are carrying out in an organism catalytical function refer to:

<p>enzymes (E)</p> Signup and view all the answers

During mutation of hemoglobin gene glutamic acid is substituted by another one and this results in sickle-cell anemia. Which amino acid will be occured in the hemoglobin instead of glutamic acid resulting in this disease?

<p>val (A)</p> Signup and view all the answers

Vitellin contains:

<p>phosphoric acids residues (E)</p> Signup and view all the answers

Monomers of Nucleic acids are:

<p>nucleotides (B)</p> Signup and view all the answers

Which class of enzymes includes respiratory enzymes?

<p>oxydoreductase (C)</p> Signup and view all the answers

Enzymes of digestion belong to a class:

<p>hydrolase (E)</p> Signup and view all the answers

How enzymes do accelerate reactions:

<p>by lowering a barrier and energy of activation (E)</p> Signup and view all the answers

A temperature optimum for the majority of enzymes is:

<p>36-45^0C (B)</p> Signup and view all the answers

Which of following factors doesn't influence on enzymatic reactions?

<p>The nature of enzyme (B)</p> Signup and view all the answers

Reactions of nonhydrolytic cleavage or connection on the site of double bond are catalyzed by:

<p>lyases (D)</p> Signup and view all the answers

Competitive inhibitors:

<p>contact with active center of enzyme (A)</p> Signup and view all the answers

The enzymes influencing on certain substrate and catalyzing the same reaction with this substrate, but distinguish on physical and chemical properties refer to:

<p>isoenzymes (C)</p> Signup and view all the answers

Which class of enzymes does chymotrypsin belong to?

<p>hydrolases (A)</p> Signup and view all the answers

Enzyme, catalyzing splitting of H2O2 to water and oxygen belong to:

<p>catalases (E)</p> Signup and view all the answers

Cytochromes concern to a class of:

<p>oxydoreductases (A)</p> Signup and view all the answers

Where do oxidative phosphorylations occur?

<p>mitochondria (B)</p> Signup and view all the answers

What is the multienzymic complex?

<p>group of the enzymes possessing various specificity of action (E)</p> Signup and view all the answers

The control of breath is carried out by:

<p>concentration of ATP (E)</p> Signup and view all the answers

The basic function of the fourth respiratory complex is transfer of electrons from cytochrome to:

<p>oxygen (C)</p> Signup and view all the answers

Lactatedehydrogenase-1 (LDH1) occurs in

<p>heart (E)</p> Signup and view all the answers

Glutathione peroxidase contains the following metal:

<p>selenium (D)</p> Signup and view all the answers

Coenzyme of cocarboxylase-is:

<p>thiamine pyrophosphate (E)</p> Signup and view all the answers

The spatial orientation of a polypeptide chain containing alpha helices, beta structures, and areas without a periodic structure is called:

<p>tertiary structure (A)</p> Signup and view all the answers

Individual polypeptide chains of oligomeric proteins are called:

<p>protomers (C)</p> Signup and view all the answers

The number and order of the compound of protomers in a protein is called:

<p>Quaternary structure (C)</p> Signup and view all the answers

In medical practice, denaturing agents are used to sterilize medical instruments in autoclaves. To provide a denaturing agent:

<p>high temperature (B)</p> Signup and view all the answers

Fibrillar proteins as opposed to globular:

<p>do not have complex spatial packaging (A)</p> Signup and view all the answers

Hydration of proteins is a:

<p>formation of an aqueous shell due to the presence of uncharged polar and ionogenic groups on the surface of the protein (E)</p> Signup and view all the answers

Protein denaturation is a process in which:

<p>violation of native protein conformation (B)</p> Signup and view all the answers

Immunoglobulins by chemical nature are:

<p>glycoproteins (D)</p> Signup and view all the answers

The main function of histones is:

<p>stabilization of the spatial structure of DNA and regulation of gene expression (D)</p> Signup and view all the answers

The polypeptide portion of a complex protein is called:

<p>apoprotein (C)</p> Signup and view all the answers

The non-amino acid portion of a complex protein is called:

<p>prosthetic group (A)</p> Signup and view all the answers

Proteins that perform mainly structural function include:

<p>myosin (A), collagen (B)</p> Signup and view all the answers

Hormonal function these proteins perform:

<p>insulin (A)</p> Signup and view all the answers

The transport function of these proteins performs:

<p>hemoglobin (E)</p> Signup and view all the answers

The protective function of these proteins performs:

<p>interferon (A)</p> Signup and view all the answers

Contractile function of these proteins performs:

<p>myosin (F)</p> Signup and view all the answers

The active center of the one-component enzyme is formed:

<p>radicals of amino acid residues (C)</p> Signup and view all the answers

Complex two-component enzymes have a non-protein part called:

<p>cofactor (C)</p> Signup and view all the answers

The second stage of enzymatic catalysis is:

<p>transformation of the substrate in the enzyme-substrate complex (C)</p> Signup and view all the answers

Allosteric center of the enzyme is:

<p>a set of functional groups on the surface of the enzyme interacting with effectors (A)</p> Signup and view all the answers

An example of a drug is a structural analog of paraaminobenzoic acid, from which H4 (folate) is synthesized in a microorganism cell, participating in the biosynthesis of nitrogenous bases

<p>sulfamides (B)</p> Signup and view all the answers

The basis of the action of some toxic substances is the inhibition of enzyme activity, for example, compounds:

<p>mercuries (C)</p> Signup and view all the answers

Enzymes that catalyze hydrolytic decomposition reactions belong to the class:

<p>hydrolase (C)</p> Signup and view all the answers

Enzymes that catalyze the cleavage from substrates of certain groups in a nonhydrolytic way with the formation of a double bond belong to the class:

<p>lyase (B)</p> Signup and view all the answers

Flashcards

Non-participating bond

Coordination bonds do not participate in forming the tertiary structure of proteins.

Casein class

Casein belongs to the class of phosphoproteins.

Non-protein amino acid

Beta-alanine is not found in the structure of proteins. It is a non-protein amino acid.

Imino acid

Proline is an imino acid, which is a type of amino acid.

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Sulfur-containing amino acid

Methionine is the only standard amino acid that contains sulfur in its side chain.

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Hemoglobin formula

The quaternary structure of hemoglobin is described by the formula α2β2.

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Basic nucleoprotein

Histones are basic simple proteins found in nucleoproteins of humans.

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Function of Nucleic Acids

Nucleic acids preserve and transfer genetic information and synthesize proteins.

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Catalytical proteins

Enzymes are proteins that act as biological catalysts.

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Amino acid change

In sickle cell anemia, valine replaces glutamic acid in hemoglobin.

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Vitellin contains:

Vitellin contains phosphoric acids residues.

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Monomers of Nucleic Acids

Nucleotides are the monomers of nucleic acids.

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Respiratory enzyme class

Oxydoreductases includes respiratory enzymes, such as dehydrogenases and oxidases.

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Digestion Enzyme Class

Enzymes of digestion belong to hydrolase class.

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Reaction acceleration

Enzymes accelerate reactions by lowering the activation energy.

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Optimum temperature

Majority of enzymes: Their temperature optimum lies between 36-45 degrees Celsius.

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Factors doesn't influence enzymatic reactions

pH environments does not influence on enzymatic reactions.

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Nonhydrolytic cleavage catalysts

Reactions of nonhydrolytic cleavage or connection on the site of double bond are catalyzed by lyases.

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Competitive inhibitors

Competitive inhibitors bind with catalytic sites of active center.

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Enzyme variants

Isoenzymes are enzymes that catalyze the same reaction but differ in physical and chemical properties.

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Study Notes

  • Coordination bonds do not participate in the formation of the tertiary structure of proteins.
  • Casein belongs to the class of phosphoproteins.
  • Beta-alanine is an amino acid not found in the structure of protein molecules.
  • Proline represents an imino acid.
  • Methionine is an amino acid that contains sulfur.
  • The quaternary structure of hemoglobin is described by the formula alfa2beta2.
  • Protamine, albumins, and histones represent basic nucleoproteins in humans.
  • Nucleic acids function in the preservation and transfer of genetic information, as well as the synthesis of proteins.
  • Enzymes facilitate catalytic functions within an organism.
  • Mutation of the hemoglobin gene where glutamic acid is substituted results in sickle-cell anemia.
  • Valine will occur in hemoglobin instead of glutamic acid, resulting in sickle-cell anemia.
  • Vitellin contains lipids.
  • Nucleotides are monomers of nucleic acids.
  • Oxidoreductases encompass the class of respiratory enzymes.
  • Hydrolases represent the class of digestive enzymes.
  • Enzymes accelerate reactions by lowering the energy of activation
  • The optimum temperature for most enzymes falls within 36-45°C.
  • The nature of the enzyme is not a factor that influences enzymatic reactions.
  • Reactions involving nonhydrolytic cleavage or connection at a double bond site are catalyzed by lyases.
  • Competitive inhibitors contact with the active center of an enzyme.
  • Isoenzymes influence a certain substrate and catalyze the same reaction, but they possess distinct physical and chemical properties.
  • Chymotrypsin is classified as a hydrolase.
  • Catalase is the enzyme responsible for catalyzing the splitting of H2O2 into water and oxygen.
  • Cytochromes are classified as oxidoreductases.
  • Oxidative phosphorylation occurs in the mitochondria.
  • Multienzymic complexes represent a group of enzymes that possess various specificities of action.
  • The concentration of malate controls breath.
  • The basic function of the fourth respiratory complex involves transferring electrons from cytochrome to oxygen.
  • Lactate dehydrogenase-1 (LDH1) is predominantly found in the heart.
  • Glutathione peroxidase contains the metal selenium.
  • Cocarboxylase has thiamine pyrophosphate as its coenzyme.
  • The spatial orientation of a polypeptide chain containing alpha helices, beta structures, and areas without a periodic structure is referred to as the tertiary structure.
  • Protomers are individual polypeptide chains of oligomeric proteins.
  • The number and order of the compound of protomers in a protein is called its quaternary structure.
  • Alcohols serve as denaturing agents used in medical practice to sterilize medical instruments in autoclaves.
  • Fibrillar proteins - as opposed to globular - do not have complex spatial packaging.
  • Hydration of proteins involves the formation of an aqueous shell due to the presence of uncharged polar and ionogenic groups on the surface of the protein
  • Protein denaturation is a process in which the native protein conformation is lost.
  • Immunoglobulins are, by chemical nature defined as glycoproteins.
  • Binding and stabilization of the spatial structure of DNA and regulation of gene expression are the main function of histones.
  • A polypeptide portion of a complex protein is known as an apoprotein.
  • The non-amino acid portion of a complex protein is referred to as a prosthetic group.
  • Collagen and myosin are proteins that perform mainly structural functions.
  • Insulin facilitates the hormonal function in proteins.
  • Hemoglobin performs a transport function.
  • Interferon enables a protective function through proteins.
  • Myosin is a protein that enables the contractile function.
  • Radicals of mainly amino acid residues form the active center of a one-component enzyme
  • Complex two-component enzymes have a non-protein part referred to as a cofactor.
  • The creation of the enzyme-substrate complex is the second stage of enzymatic catalysis.
  • Breaking the reaction product down from the enzyme is the third stage of enzymatic catalysis.
  • A set of functional groups on the enzyme's surface that interacts with effectors defines the allosteric center of an enzyme.
  • An example of a drug is a structural analog of para-aminobenzoic acid, from which H4 (folate) is synthesized in a microorganism cell, participating in the biosynthesis of nitrogenous bases
  • Many toxic substances inhibit enzyme activity.
  • Hydrolases belong to the class of enzymes that catalyze hydrolytic decomposition reactions.
  • Lyases belong to the class of enzymes that catalyze the cleavage from substrates of certain groups in a nonhydrolytic way with the formation of a double bond.
  • Isomerases catalyze the reaction of intramolecular transfer of chemical groups
  • Ligases are the class of enzymes that catalyze the connection of two molecules- coupled with the cleavage of the macroerhic bond in the ATP molecule.
  • A gene defect or gene expression is the cause of hereditary enzymopathies.
  • Exposure to toxic substances will cause toxic enzymopathies.
  • The ability of enzymes to maintain their activity outside the human body will allow a basis of enzymodiagnostics.
  • Hydrolases include Tripsin, pepsin, and catepsin.
  • Dynamic functions include transformations, transport, metabolic control, and contraction
  • There are 4 known types of collagen, one being contained in an organism in the greatest quantity, which meets in skin, tendons, bones, cornea.
  • Shows the second type of collagen met in intima of vessels and cardiovascular system.
  • Shows fourth type of collagen that contains that meet in cartilages or the glassoid body of an eye.
  • Nuclease are in the hydrolase class.
  • The main mechanism for regulating enzyme activity is controlled through metabolic pathways
  • There are the following types of phosphoproteins that shows milk casein(ogen) is with (P~ 1%).
  • Serine, threonine, and tyrosine amino acids participate in forming ester bonds between amino acids and phosphoric acid.
  • Hemoglobin or HbS with (sickle cell hemoglobin) has the formula α2β2.
  • Hemoglobins of vertebrate blood cells perform two major transport functions, for O2 from lungs to peripheral tissues and transport of CO2 and protons from peripheral tissues to lungs.
  • Hemoglobin does not participate as forming a source of bile.
  • Myoglobin - stores oxygen that under conditions of oxygen deprivation (e.g., serve exercise) is released for use by muscle mitochondria for oxygen-dependent synthesis of ATP and consists of 153 amino acids
  • Transferrin is B1-globulin with a molecular mass of approximately 76 kDa.
  • Ferritin - under normal conditions, it stores iron that can be called upon for use, which requires more conditional iron called Hemochromatosis. Ceruloplasmin holds a protein with a blue color because of its high copper content and carries 90% of our plasma's existing copper levels.
  • More than 5% of carbohydrates are contained in the structure of glycoproteins
  • All the representatives of proper/ true GP or sialoproteins, hormones, protrombin, transcortin, ceruloplasmin, haptoglobin protein of blood's, group specificity, immunoglobulins, nor mucins
  • These -proteins of slime are contained in saliva - they provide high viscosity of one -promoting covering of the food and in a secretion of all glands of gastro intestinal tract +respiratory ways +urine sexual system where they carry out a protective role , in slime of fish , frogs and other reptiles, where they protect a surface of body from the harmful external factors
  • Sialic acid is a carbohydrate of proteoglycans
  • Musine there are 6 types of glucosaminoglycans
  • Is a quantity of molecules of enzymes on which -the one molecule of enzymes acts during1 minute The next property of high enzymes activates. The activity is measured in catal.
  • Shows substrate specificity named “absolute” with Succinate dehydrogenase to fumarate
    • SHOWs two-types of enzymes:
    • Specificity: amylase starch and glycogen
  • Non-competitive inhibition - enzyme cytochrome oxidase with non-competitive inhibition
  • Carboxypeptidase with conjugated proteins and Zinc is a coenzyme.
  • The lipase of pancreatic juice is secreted by pancreatic cells in inactive form - one that is only activated by conjugated salts of Bile acid.
  • The urokinase and streptokinase that show used lysis of blood clots/ i.e in thrombophlebitis and aminotransferases consist of - apoenzyme +coenzyme?
  • The following Acyltransferases -apoenzyme + Coenzyme
  • Which only consist B2
  • The only source thiamine shows enzyme participating in the reactions of protein synthesis.
  • Alfa-ketoglutaric acid + aspartic acid is a way to have oxaloacetic acid as an enzymatic reaction.
  • The importance in Methyltransferases is to catalyze the methylation . Vitamin B12 helps the reaction forming
  • The only source 3 Glycine in Ethanolamine
  • There are five functions for nucleoproteins in the organism:
    • Protective
    • Water metabolism
    • Structural -Tissue specificity -Transport
  • The only acid that nucleic and simple nucleoproteins contain is the rest of phosphoric acids.
  • The structural units of mononucleotides are that they consist of polynucleotide.
  • There will be sources of formation of nucleoside triphosphate in the function of nucleotides. Adenylic acid should enter -RNA
  • DNA and RNA need Thymidine monophosphate as its components
  • There must be-enters of DNA in Nucleotides, and they are not part of DNA at all. -Nucleoside triphosphate should have a great importance as its an source for phosphoric acid and energy is still necessary for the synthesis of proteins + participates in forming nucleic acids or in a component of nucleotide.
  • Complementarity happens characteristically with the two molecules A and G
  • From the listed molecules protein cannot be applied from the principle of having -molecular complementarity For a molecule DNA cant be changeable quantity: The rules follow constant quantity of molecule that has to big a molecular weight for observance of rules from Chargaff
  • Primary structures of any kind of DNA are usually determined by: having to link polymerase
  • As showing to exist on a molecule -Primary structure will not happen on molecules by disulfide bond.
  • To show where should primary structure of our known DNA be represented :Two -spiral polynucleotide.
  • There happens with observances of the rules for the type of DNA - which only happens with chain
  • By known to showing which structures are best for the types of DNA + show the known chains , which secondary structure DNA might come stabilized by: force Van der Waals
  • Secondary must show no support +
    Tertiary with any structures from loop showing to exist on a free chain showing to be best +closed : with chromosome.
  • To know what is the difference to any -RNA - this that is from the submitted rules from Chargaff-big molecular weight +has one polynucleotide chain &has not changeable quantity
  • Now the function with structures that exist around the molecules of -Now to show to knowing what happens when molecules show differences
  • To show which different types exist + what functions exist between these different molecuels that have to be able to form around us . t -RNA must carry amino acids through amino acids form on ribosome to form to transport the from -DNA amino to from its ribosome. To know how To known structures of molecular functions show specificity t-RNA with these amino acids. To show what is from amino aicds + tRNA with spatial conformity + To show where known from from -DNA to with a ribosome .

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