Biochemistry Enzymes and Coenzymes Quiz
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Questions and Answers

Vitamin B₃ is also known as Niacin.

True (A)

Coenzyme Q has a structure that is similar to Vitamin A.

False (B)

Lipoic acid serves as a carrier of carbon in oxidative decarboxylation.

False (B)

Pyridoxal phosphate is involved in transamination and decarboxylation of amino acids.

<p>True (A)</p> Signup and view all the answers

Biotin acts as a carrier of nitrogen in the fixation of CO₂ reactions.

<p>False (B)</p> Signup and view all the answers

Hydroperoxidases can use hydrogen peroxide as a substrate.

<p>True (A)</p> Signup and view all the answers

Dioxygenases incorporate only one atom of molecular oxygen into the substrate.

<p>False (B)</p> Signup and view all the answers

Superoxide dismutase is an enzyme that protects organisms from oxygen toxicity.

<p>True (A)</p> Signup and view all the answers

Catalase primarily uses organic peroxides as electron donors.

<p>False (B)</p> Signup and view all the answers

L-ascorbate oxidase catalyzes a reaction involving molecular oxygen.

<p>True (A)</p> Signup and view all the answers

All enzymes are proteins except ribozymes, which are types of RNA that catalyze reactions.

<p>True (A)</p> Signup and view all the answers

Extracellular enzymes are produced and act inside the cells.

<p>False (B)</p> Signup and view all the answers

Enzyme activity is expressed in International Units (IU) by measuring the conversion of one micromole of substrate per minute.

<p>True (A)</p> Signup and view all the answers

Holoenzymes consist only of a protein molecule.

<p>False (B)</p> Signup and view all the answers

Cofactors can only be organic compounds like vitamins.

<p>False (B)</p> Signup and view all the answers

Prosthetic groups are small organic molecules bound to enzymes by covalent bonds.

<p>True (A)</p> Signup and view all the answers

Coenzymes are strongly attached to enzymes and do not leave during the reaction.

<p>False (B)</p> Signup and view all the answers

A katal measures the amount of enzyme that catalyzes the conversion of one mole of substrate per second.

<p>True (A)</p> Signup and view all the answers

Metal-activated enzymes have a metal that is tightly attached to the apoenzyme.

<p>False (B)</p> Signup and view all the answers

Calcium is used by lipase as an essential metal ion.

<p>True (A)</p> Signup and view all the answers

Manganese is associated only with the enzyme xanthine oxidase.

<p>False (B)</p> Signup and view all the answers

The active site of an enzyme consists solely of binding sites.

<p>False (B)</p> Signup and view all the answers

Enzymes can accelerate reactions by a factor of 10³ to 10⁸ times compared to uncatalyzed reactions.

<p>True (A)</p> Signup and view all the answers

Metalloenzymes can lose their metal ions during purification through dialysis.

<p>False (B)</p> Signup and view all the answers

Zinc does not participate in the catalytic activity of alcohol dehydrogenase.

<p>False (B)</p> Signup and view all the answers

The hydroxyl group of serine can be found in the active site of an enzyme.

<p>True (A)</p> Signup and view all the answers

The amount of enzyme in a cell is only determined by the rate of enzyme synthesis.

<p>False (B)</p> Signup and view all the answers

Positive effectors are molecules that inhibit the catalytic reaction in allosteric regulation.

<p>False (B)</p> Signup and view all the answers

Citrate acts as a positive allosteric effector for the enzyme phosphofructokinase1.

<p>False (B)</p> Signup and view all the answers

Feedback inhibition occurs when the end products of a metabolic pathway inhibit the activity of the first enzyme.

<p>True (A)</p> Signup and view all the answers

Allosteric enzymes lack a regulatory site separate from the active site.

<p>False (B)</p> Signup and view all the answers

Enzyme turnover number indicates the number of substrate molecules converted to products per enzyme molecule per second.

<p>True (A)</p> Signup and view all the answers

Pepsin is an enzyme that demonstrates absolute specificity for its substrate.

<p>False (B)</p> Signup and view all the answers

The Michaelis-Menten equation can apply to allosterically regulated enzymatic reactions.

<p>False (B)</p> Signup and view all the answers

The EC number for alcohol dehydrogenases is EC 1.1.1.1.

<p>True (A)</p> Signup and view all the answers

Reversible covalent modification in enzymes involves the addition or removal of phosphate groups.

<p>True (A)</p> Signup and view all the answers

Urease can catalyze the hydrolysis of both urea and thiourea.

<p>False (B)</p> Signup and view all the answers

Repressors increase the synthesis of key enzymes in glycolysis.

<p>False (B)</p> Signup and view all the answers

Hexokinase enzymatically facilitates the phosphorylation of disaccharide sugars.

<p>False (B)</p> Signup and view all the answers

Carbonic anhydrase is considered one of the fastest enzymes in the human body.

<p>True (A)</p> Signup and view all the answers

Group specificity allows an enzyme to act on molecules with specific functional groups.

<p>True (A)</p> Signup and view all the answers

Lactate dehydrogenase is named for its ability to catalyze the dehydrogenation of lactose only.

<p>False (B)</p> Signup and view all the answers

Flashcards

What are enzymes?

Enzymes accelerate chemical reactions without being consumed in the process. They are like biological catalysts, speeding up biochemical reactions within living organisms.

What are the different types of enzymes?

Most enzymes are made up of proteins. They can exist individually, referred to as simple enzymes, or as a complete unit called a holoenzyme. Holoenzymes consist of a protein part called an apoenzyme and a non-protein component called a cofactor. Coenzymes are organic molecules that are loosely attached to the enzyme and aid in its function.

What are extracellular enzymes?

They are produced inside cells but release their activity outside the cells. For example, digestive enzymes like pepsin and α-amylase are produced in the stomach and small intestine, respectively, but exert their action on food in the digestive tract.

What are intracellular enzymes?

They are synthesized and perform their function within the cells. For example, metabolic enzymes like ALT and AST play crucial roles in cellular metabolism.

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What is a substrate?

The substance that the enzyme acts upon. It's like the ingredient that the enzyme modifies to create a product.

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Where are enzymes produced within the cell?

They are produced and function within the cell. Some are synthesized in the cytoplasm, while others are made in the endoplasmic reticulum. A small number of enzymes are synthesized in the mitochondria. These enzymes are essential for various cellular processes.

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Where are enzymes found in the body?

Enzymes are present in all body cells, both in the extracellular fluids like plasma and cerebrospinal fluid (CSF) and within the intracellular compartments of cells. They participate in a wide range of biochemical reactions crucial for life.

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How is enzyme activity expressed?

The international unit (IU) defines the amount of enzyme required to convert 1 micromole of substrate into product per minute. One unit is equivalent to one micromole per minute. This is a standard measure used to quantify enzyme activity.

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Coenzyme A (CoA)

A coenzyme involved in transferring acyl groups of fatty acids, activating them for metabolism, and participating in oxidative decarboxylation.

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Pyridoxal Phosphate

A coenzyme essential for transamination, decarboxylation, and desulfuration of amino acids, playing a crucial role in amino acid metabolism.

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Lipoic Acid

A coenzyme involved in the oxidative decarboxylation of pyruvate and α-ketoglutarate, crucial for energy production.

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Coenzyme Q (Ubiquinone)

A small molecule that carries hydrogen atoms and electrons, playing a critical role in cellular respiration.

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Biotin (Vitamin B7)

A coenzyme that is essential for the fixation of carbon dioxide, a critical step in photosynthesis and other metabolic pathways.

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What are metal-activated enzymes?

Enzymes that require a metal ion for activity, but the metal is not tightly bound and can be removed by dialysis.

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What are metalloenzymes?

Enzymes that require a metal ion tightly bound for their function, which cannot be removed by dialysis..

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What is the role of metal ions in metalloenzymes?

The metal ion in a metalloenzyme is vital for its three-dimensional structure, maintaining its shape for proper function.

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How do metal ions interact with substrates?

Metal ions in metalloenzymes can directly interact with substrate molecules, facilitating their binding to the enzyme.

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What role do metal ions play in enzyme-coenzyme interactions?

Some metal ions in metalloenzymes contribute to the formation of a bridge between the enzyme and a coenzyme, enhancing their collaboration.

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What is an active site?

The specific region of an enzyme where substrate binding and catalysis occur, containing two distinct sites.

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What is the binding site of an active site?

The site within the active site of an enzyme where the substrate molecule binds.

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What is the catalytic site of an active site?

The site within the active site of an enzyme where the chemical reaction is catalyzed.

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Enzyme turnover number

Refers to the number of substrate molecules transformed into products per unit of time by a single enzyme molecule.

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Enzyme Commission number (EC number)

A naming system used to classify enzymes based on their reaction type, functional group, coenzyme, and substrate.

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Enzyme specificity

The ability of an enzyme to bind and catalyze reactions with specific molecules, excluding others.

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Absolute specificity

An enzyme that acts on only one substrate, showing a high degree of specificity.

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Group specificity

An enzyme that acts on molecules sharing a particular functional group, showing a moderate level of specificity.

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Biological catalysts

Enzymes that accelerate reactions by lowering the activation energy required for the reaction to occur.

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Substrate

The substance upon which an enzyme acts, undergoing a chemical transformation.

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Products

Molecules that are transformed by enzymes into products.

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What are hydroperoxidases?

These enzymes use hydrogen peroxide (H₂O₂) or organic peroxides as substrates. They are involved in the breakdown of these reactive molecules protecting cells from damage.

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What do peroxidases do?

They reduce peroxides using various electron acceptors like ascorbate, quinones, and reduced glutathione.

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What is special about catalase?

Catalase uses hydrogen peroxide as both an electron donor and an electron acceptor.

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What do oxygenases do?

They directly transfer and incorporate oxygen into a substrate molecule, leading to modifications within the molecule.

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How do superoxide dismutases help?

They protect aerobic organisms from the damaging effects of superoxide anion free radical (.O₂⁻), a reactive molecule that can harm cells.

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Catalytic Site

The region on an enzyme where the substrate binds and the chemical reaction occurs.

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Allosteric Site

A site on an enzyme where a molecule different from the substrate binds, often leading to a change in the enzyme's activity.

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Effector

A molecule that binds to an allosteric site and alters the enzyme's activity.

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Positive Effector

An effector that increases the enzyme's activity.

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Negative Effector

An effector that decreases the enzyme's activity.

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Feedback Inhibition

A type of allosteric regulation where the end product of a metabolic pathway inhibits the activity of an enzyme earlier in the pathway.

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Enzyme Amount Regulation

Regulation of enzyme activity by controlling the amount of enzyme produced.

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Covalent Modification

The process of adding or removing a phosphate group to an enzyme, which can activate or inactivate it.

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Study Notes

Enzymes

  • Enzymes are protein catalysts that increase the rate of chemical reactions in biological systems without changing themselves.
  • All enzymes are proteins except some types of RNA which act as enzymes catalyzing the cleavage and synthesis of phosphodiester bonds. These types of RNA are called ribozymes.
  • Substrate: The substance upon which the enzyme acts.
  • Cellular distribution of enzymes:
    • Intracellular enzymes: Enzymes produced and act inside the cells (e.g., metabolic enzymes).
    • Extracellular enzymes: Enzymes produced inside cells but act outside cells (e.g., digestive enzymes).
  • Enzymes are mainly synthesized in the cytosol or endoplasmic reticulum (ER), some in the mitochondria. They are present in all body cells and are found in both extracellular fluids (e.g., plasma, CSF) and intracellular compartments (e.g., cell membrane, cytosol, mitochondria, lysosomes, microsomes, nucleus).
  • Enzyme activity is expressed in:
    • International unit (IU): The amount of enzyme that catalyzes the conversion of one micromole (µmol) of substrate to product per minute.
    • Katal: The amount of enzyme that catalyzes the conversion of one mole of substrate to product per second (1 katal = 1 mol s⁻¹).
  • Nature of enzymes: Most enzymes are proteins. Enzymes can exist as:
    • Simple enzymes: Made up of only a protein molecule.
    • Holoenzymes: Made up of a protein part (apoenzyme) and a non-protein part (cofactor). Cofactors can be organic compounds (e.g., vitamins) or inorganic metal ions (e.g., Fe²⁺, Zn²⁺, Mg²⁺).
  • Organic molecules are divided into prosthetic groups and coenzymes.
    • Prosthetic group: Small organic molecule covalently bound to the apoenzyme.
    • Coenzyme: Small organic molecule non-covalently bound to the apoenzyme. Coenzymes are derivatives of vitamins.
  • Coenzymes are categorized as:
    • Codehydrogenases
    • Group transferring coenzymes

Enzyme Nomenclature

  • Trivial names: Names that don't describe the source, function, or catalyzed reaction.

  • Recommended names: Typically end in "-ase" and describe the substrate or the reaction.

  • Enzyme Commission (EC) number: A classification system that uses four numbers to identify enzymes. The first number indicates the reaction type, the second number indicates the functional group, the third number identifies the coenzyme, and the fourth number identifies the substrate.

  • Specificity: Enzymes are specific for their substrates.

    • Absolute specificity: One enzyme only catalyzes on one substrate.
    • Group specificity: Enzymes act on molecules with specific functional groups.
    • Optical specificity: Enzymes are specific for one optical isomer.
    • Dual specificity: Acts on two substrates in the same reaction

Enzyme Kinetics

  • Enzyme kinetics: Study of reaction rates involving enzymes.
  • Velocity of reaction: The increase in product concentration or decrease in substrate concentration over time.
  • Initial velocity: The reaction velocity measured at the start.
  • Michaelis-Menten equation: Describes the relationship between reaction velocity and substrate concentration.
  • Km: Michaelis constant, numerically equal to the substrate concentration at which the reaction velocity is half of the maximum velocity (Vmax). Km reflects enzyme-substrate affinity.
  • Vmax: Maximum velocity, the maximum rate of reaction achievable.

Enzyme Activity Factors

  • Temperature: Enzyme activity increases with temperature until an optimum temperature (around 37°C for many human enzymes).
  • pH: Enzyme activity is optimal at a specific pH range.
  • Enzyme concentration: Increasing enzyme concentration increases the reaction rate up to a point.
  • Substrate concentration: Increasing substrate concentration increases the reaction rate up to a saturation point (maximum velocity).
  • Inhibitors: Substances that decrease enzyme activity (competitive and non-competitive, irreversible).

Enzyme Classification

  • Enzymes are classified based on the reactions they catalyze into six major classes:
    • Oxidoreductases (oxidation-reduction reactions)
    • Transferases (transfer a group from one molecule to another)
    • Hydrolases (hydrolysis reactions)
    • Lyases (addition or removal of groups to form double bonds)
    • Isomerases (isomerization reactions)
    • Ligases (joining two molecules using ATP)

Isoenzymes

  • Isoenzymes: Different forms of an enzyme that have the same catalytic function but differ in amino acid sequence, physical properties, and/or organ distribution.
  • Isoenzyme variations are important in clinical diagnosis.

Enzyme Inhibition

  • Inhibitors: Substances that decrease enzyme activity, either reversibly (competitive, non-competitive, uncompetitive) or irreversibly.
  • Irreversible inhibition: The inhibitor forms a permanent bond with the enzyme.
  • Reversible inhibition: The inhibitor forms a temporary bond with the enzyme.

Enzyme Regulation

  • Regulation of enzyme activity: Occurs through amount of enzyme, allosteric regulation, feedback inhibition, covalent modification.
  • Allosteric regulation: Enzymes that have an active site and an allosteric site that accepts effectors, which change the enzyme's shape and therefore activity.
  • Feedback inhibition: End products inhibit the enzyme.
  • Covalent modifications: Phosphate addition or removal modifies enzyme activity.

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