Biochemistry: Bonds, Water, and Hydrophobicity

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Questions and Answers

Which type of interaction is primarily responsible for the formation of a lipid bilayer in an aqueous solution?

  • Hydrogen bonds between water and lipid tails
  • Van der Waals forces between water molecules
  • Hydrophobic interactions between lipid tails (correct)
  • Electrostatic/ionic bonds between lipid heads

What is the significance of the 104.5 degree bond angle in a water molecule for its properties?

  • It allows water to form exactly two hydrogen bonds per molecule.
  • It results in a bent molecular shape and a permanent dipole. (correct)
  • It contributes to water's linear shape, preventing dipole formation.
  • It maximizes the potential for ionic bonding.

How does the arrangement of fatty acid tails in micelles contribute to entropy?

  • It increases entropy by sequestering the tails away from water. (correct)
  • It maintains entropy by allowing water molecules to form hydrogen bonds.
  • It decreases entropy by increasing the order of water molecules.
  • It reduces entropy by maximizing the surface area of the tails exposed to water.

How does the electronegativity difference between oxygen and hydrogen contribute to the properties of water?

<p>It leads to a partial negative charge on oxygen and partial positive charges on hydrogens. (B)</p> Signup and view all the answers

Which statement accurately describes the behavior of amphipathic molecules in water?

<p>They orient themselves to bury nonpolar regions and expose polar regions to water. (B)</p> Signup and view all the answers

Why do non-polar substances, such as methane, not dissolve in water?

<p>They disrupt water's hydrogen bond network without forming compensating interactions. (B)</p> Signup and view all the answers

What is the role of hydrogen bonds in determining the properties of water?

<p>They contribute to water's high boiling point and surface tension. (A)</p> Signup and view all the answers

How do proteins utilize "hydration shells" to interact with water?

<p>Polar and non-polar regions attract complementary opposites in water. (A)</p> Signup and view all the answers

Considering the types of bonds, what is the nature of Van der Waals interactions?

<p>Temporary dipole-dipole moments in non-polar substances (C)</p> Signup and view all the answers

If a molecule is described as hydrophilic, what characteristic would you expect it to possess?

<p>Polar groups such as -OH or $NH_3^+$ (A)</p> Signup and view all the answers

Flashcards

Electrostatic/Ionic bonds

Occur between ions of opposite charges.

Hydrogen Bonds

Bond between H and another electronegative molecule like oxygen (O-H).

Hydrophobic Interactions

Non-polar molecules bond in a polar solvent. Example: Formation of bilayer.

Van der Waals

Bond involves temporary dipole-dipole moments in non-polar substances and dipole-dipole moments in polar molecules.

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Hydrophilic

Easily dissolves in water due to the presence of -OH, NH3+, COO- etc.

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Hydrophobic

Doesn't dissolve in water due to presence of long hydrocarbon chains, aliphatic rings, etc.

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Amphipathic

Has polar and non-polar parts, like fatty acids (polar head, nonpolar tail).

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Water Bond Angle

Bond angle of 104.5 degrees.

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Study Notes

  • General notes for biochemistry

Types of Bonds

  • Electrostatic/Ionic bonds occur between ions of opposite charges.
  • Hydrogen bonds form between hydrogen and another electronegative molecule, such as oxygen in O-H.
  • Hydrophobic interactions involve non-polar molecules bonding in a polar solvent; for example, bilayer formation.
  • Van der Waals bonds include long dispersion forces, with temporary dipole-dipole moments in non-polar substances and dipole-dipole moments in polar molecules.

Water

  • Water has a bond angle of 104.5 degrees.
  • Water has a permanent dipole.
  • Oxygen is more electronegative than hydrogen in water molecules.
  • Each water molecule can form 4 hydrogen bonds: two O-H bonds from the two lone pairs on oxygen, and one each from the two hydrogens.

Hydrophilic substances

  • Hydrophilic substances easily dissolve in water.
  • Examples of hydrophilic functional groups include -OH, NH3+, and COO-.

Hydrophobic substances

  • Hydrophobic substances do not dissolve in water.
  • The presence of long hydrocarbon chains, aliphatic rings, etc., leads to hydrophobicity.

Amphipathic substances

  • Amphipathic molecules have both polar and non-polar parts.
  • Fatty acids are amphipathic: the phosphate head is charged/polar while the fatty acid tails are non-polar.

Non-polar substances

  • Non-polar substances like oxygen, nitrogen, carbon dioxide, and methane do not dissolve in water.

Fatty acids and water molecules

  • Fatty acids surrounded by water form a H2O cage, decreasing entropy.
  • In micelles, fatty acid tails are sequestered inside, increasing entropy.

Proteins and water

  • Proteins with polar and non-polar regions attract complementary opposites in water, forming a "hydration" shell.

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