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Questions and Answers
When was the term 'biochemistry' coined?
When was the term 'biochemistry' coined?
Who discovered the first enzyme?
Who discovered the first enzyme?
What did Friedrich Wöhler's 1828 paper prove?
What did Friedrich Wöhler's 1828 paper prove?
In what year was laccase discovered?
In what year was laccase discovered?
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What is the ultimate concern of biochemistry?
What is the ultimate concern of biochemistry?
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What is the free-energy change equation, based on the given text?
What is the free-energy change equation, based on the given text?
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Under what conditions do spontaneous reactions occur?
Under what conditions do spontaneous reactions occur?
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What type of reactions are often coupled to reactions that release free energy?
What type of reactions are often coupled to reactions that release free energy?
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What is the central issue in bioenergetics, as mentioned in the text?
What is the central issue in bioenergetics, as mentioned in the text?
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What is the free-energy change for reaction 2, based on the text?
What is the free-energy change for reaction 2, based on the text?
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Which biomolecule serves as energy-rich fuel stores, rigid structural components, and extracellular recognition elements?
Which biomolecule serves as energy-rich fuel stores, rigid structural components, and extracellular recognition elements?
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What type of isomers have distinct biological roles despite their similar chemical makeup?
What type of isomers have distinct biological roles despite their similar chemical makeup?
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What is the central element in biomolecules, forming stable single bonds with up to four other carbon atoms?
What is the central element in biomolecules, forming stable single bonds with up to four other carbon atoms?
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Which type of macromolecule represents the sum of all proteins in a cell?
Which type of macromolecule represents the sum of all proteins in a cell?
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Which small molecules are contained in cells and are universal, including amino acids, nucleotides, sugars, and carboxylic acids?
Which small molecules are contained in cells and are universal, including amino acids, nucleotides, sugars, and carboxylic acids?
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Which type of bacteria has an outer membrane composed of a lipid bilayer?
Which type of bacteria has an outer membrane composed of a lipid bilayer?
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What organelles are found in eukaryotic cells?
What organelles are found in eukaryotic cells?
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What process involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
What process involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
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What provides structure and organization to the cell?
What provides structure and organization to the cell?
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What supports the understanding that all organisms share a common evolutionary origin?
What supports the understanding that all organisms share a common evolutionary origin?
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How many stereoisomers can a molecule with 3 chiral centers have?
How many stereoisomers can a molecule with 3 chiral centers have?
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What is the primary factor considered in the RS system for naming stereoisomers?
What is the primary factor considered in the RS system for naming stereoisomers?
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What property of enzymes and proteins allows biological systems to distinguish between stereoisomers?
What property of enzymes and proteins allows biological systems to distinguish between stereoisomers?
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According to the first law of thermodynamics, what happens to the total energy in the universe?
According to the first law of thermodynamics, what happens to the total energy in the universe?
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What are the key factors in energy transformations according to the text?
What are the key factors in energy transformations according to the text?
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Who developed the technique for making monoclonal antibodies?
Who developed the technique for making monoclonal antibodies?
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What was Eduard Buchner's milestone achievement in 1896?
What was Eduard Buchner's milestone achievement in 1896?
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Who discovered the double helical structure of DNA?
Who discovered the double helical structure of DNA?
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For what discovery did Daniel Bovet receive the Nobel Prize?
For what discovery did Daniel Bovet receive the Nobel Prize?
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What milestone was reported in 1997?
What milestone was reported in 1997?
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What milestone achievement was reported in 1997?
What milestone achievement was reported in 1997?
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What did Friedrich Wöhler's 1828 paper prove?
What did Friedrich Wöhler's 1828 paper prove?
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In what year was laccase discovered?
In what year was laccase discovered?
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What is the ultimate concern of biochemistry?
What is the ultimate concern of biochemistry?
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When was the term 'biochemistry' coined?
When was the term 'biochemistry' coined?
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What is the maximum number of stereoisomers a molecule with 3 chiral centers can have?
What is the maximum number of stereoisomers a molecule with 3 chiral centers can have?
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What property allows biological systems to distinguish between stereoisomers?
What property allows biological systems to distinguish between stereoisomers?
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Which law of thermodynamics emphasizes the constant increase in randomness?
Which law of thermodynamics emphasizes the constant increase in randomness?
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What is the system of assigning priority to groups attached to a chiral carbon for naming stereoisomers?
What is the system of assigning priority to groups attached to a chiral carbon for naming stereoisomers?
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What type of isomers have nearly identical chemical reactivities but differ in optical activity?
What type of isomers have nearly identical chemical reactivities but differ in optical activity?
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Who discovered the first restriction enzyme?
Who discovered the first restriction enzyme?
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What milestone was reported in 1997?
What milestone was reported in 1997?
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Who developed the technique for making monoclonal antibodies?
Who developed the technique for making monoclonal antibodies?
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For what discovery did Daniel Bovet receive the Nobel Prize?
For what discovery did Daniel Bovet receive the Nobel Prize?
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What did Eduard Buchner demonstrate in 1896?
What did Eduard Buchner demonstrate in 1896?
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In the free-energy change equation, what does a negative value of ∆G indicate?
In the free-energy change equation, what does a negative value of ∆G indicate?
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What type of reactions are often coupled to reactions that release free energy?
What type of reactions are often coupled to reactions that release free energy?
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What is the primary concern of bioenergetics, as discussed in the text?
What is the primary concern of bioenergetics, as discussed in the text?
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What is the free-energy change for reaction 1, based on the text?
What is the free-energy change for reaction 1, based on the text?
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What does the equation $∆G = ∆H - T∆S$ indicate about the relationship between enthalpy, entropy, and free energy change?
What does the equation $∆G = ∆H - T∆S$ indicate about the relationship between enthalpy, entropy, and free energy change?
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What type of bonds can carbon form, and what is the extent of rotation around each type of bond?
What type of bonds can carbon form, and what is the extent of rotation around each type of bond?
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What are the major constituents of cells, and what are the functions of proteins within cells?
What are the major constituents of cells, and what are the functions of proteins within cells?
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What do nucleic acids store and transmit, and what are the roles of some RNA molecules?
What do nucleic acids store and transmit, and what are the roles of some RNA molecules?
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What are the functions of polysaccharides and lipids in cells?
What are the functions of polysaccharides and lipids in cells?
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What role does stereochemistry play in the interaction between biomolecules?
What role does stereochemistry play in the interaction between biomolecules?
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Which of the following elements make up more than 99% of the mass of most cells?
Which of the following elements make up more than 99% of the mass of most cells?
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What is the primary factor considered in the RS system for naming stereoisomers?
What is the primary factor considered in the RS system for naming stereoisomers?
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What do supramolecular complexes primarily rely on to hold together?
What do supramolecular complexes primarily rely on to hold together?
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What is the name of the process that involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
What is the name of the process that involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
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What organelles are responsible for segregating metabolic processes and facilitating transport mechanisms like exocytosis and endocytosis?
What organelles are responsible for segregating metabolic processes and facilitating transport mechanisms like exocytosis and endocytosis?
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Which type of bacteria has a thick peptidoglycan layer in their cell envelopes?
Which type of bacteria has a thick peptidoglycan layer in their cell envelopes?
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What is the primary function of the endomembrane system in eukaryotic cells?
What is the primary function of the endomembrane system in eukaryotic cells?
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What is the main function of the dynamic cytoskeleton in a cell?
What is the main function of the dynamic cytoskeleton in a cell?
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What type of interactions primarily hold supramolecular complexes together?
What type of interactions primarily hold supramolecular complexes together?
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What does subcellular fractionation involve?
What does subcellular fractionation involve?
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Which of the following bacterial types has an outer membrane composed of a lipid bilayer?
Which of the following bacterial types has an outer membrane composed of a lipid bilayer?
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What provides structure and organization to the eukaryotic cell?
What provides structure and organization to the eukaryotic cell?
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What process involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
What process involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes?
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What holds supramolecular complexes together by noncovalent interactions, producing unique structures?
What holds supramolecular complexes together by noncovalent interactions, producing unique structures?
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What do cells use to create polymeric machines, supramolecular structures, and information repositories?
What do cells use to create polymeric machines, supramolecular structures, and information repositories?
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Study Notes
Key Milestones in Biochemistry and Cellular Foundations
- 1896: Eduard Buchner demonstrates alcoholic fermentation in yeast cell extracts, marking the first complex biochemical process outside of a cell.
- 1953: James Watson and Francis Crick discover the double helical structure of DNA.
- 1953: Hans Adolf Krebs discovers the biochemical steps of the Krebs cycle in carbohydrate metabolism.
- 1957: Daniel Bovet receives Nobel Prize for developing antihistamines.
- 1959: Severo Ochoa and Arthur Kornberg receive Nobel Prize for discoveries on DNA and RNA synthesis.
- 1970: Hamilton Smith reports the discovery of the first restriction enzyme.
- 1975: Cesar Milstein, Georges Kohler, and Niels Kai Jerne develop the technique for making monoclonal antibodies.
- 1995: FDA approves the first protease inhibitor for AIDS treatment.
- 1997: First complete nucleotide sequence of a eukaryote's chromosomes (yeast) reported.
- 2001: NIH-funded human fetal ventral mesencephalic transplant clinical trials yield negative results.
- Principles 1 and 2: Cells are the fundamental unit of life and use a small set of metabolites to create structures and information repositories.
- Principle 3 and 4: Living organisms are in a dynamic steady state, not at equilibrium, and extract energy from their surroundings to maintain homeostasis.
Key Concepts in Biochemistry
- Trace elements, essential to life, are vital for the function of specific proteins and enzymes.
- Carbon is the central element in biomolecules, forming stable single bonds with up to four other carbon atoms.
- Carbon can form covalent single, double, and triple bonds, with the ability for free rotation around single bonds and limited rotation around double bonds.
- Biomolecules are derivatives of hydrocarbons with functional groups such as alcohols, amines, aldehydes, ketones, and carboxylic acids, each conferring specific chemical properties.
- Many biomolecules are polyfunctional, containing multiple types of functional groups, determining the compound's chemical characteristics and reactions.
- Cells contain a universal set of small molecules, including amino acids, nucleotides, sugars, and carboxylic acids, with secondary metabolites being specific to the organism.
- Macromolecules, such as proteins, nucleic acids, and polysaccharides, are the major constituents of cells, with proteins also functioning as enzymes, structural elements, and more.
- Proteins, nucleic acids, and some oligosaccharides serve as informational macromolecules, with the proteome representing the sum of all proteins in a cell.
- Nucleic acids, including DNA and RNA, store and transmit genetic information, while some RNA molecules have structural and catalytic roles in supramolecular complexes.
- Polysaccharides serve as energy-rich fuel stores, rigid structural components, and extracellular recognition elements, while lipids function as structural components of membranes and energy-rich fuel stores.
- Three-dimensional structure in biochemistry is described by configuration and conformation, with stereochemistry playing a crucial role in the interaction between biomolecules.
- Geometric isomers, or cis-trans isomers, have distinct biological roles despite their similar chemical makeup, exemplified by the visual pigment in the vertebrate eye, rhodopsin, containing retinal, a vitamin A–derived lipid.
Cellular Diversity and Organization
- Organisms are distinguished by their habitats and sources of energy, such as aerobic, anaerobic, obligate anaerobes, and facultative anaerobes.
- Bacteria and Archaea share common features but differ in their cell envelopes, with Gram-positive bacteria having a thick peptidoglycan layer and Gram-negative bacteria having an outer membrane composed of a lipid bilayer.
- Eukaryotic cells contain various membranous organelles, including mitochondria, endoplasmic reticulum, golgi complexes, peroxisomes, lysosomes, vacuoles, and chloroplasts.
- Subcellular fractionation involves disrupting cells and centrifuging the homogenate to isolate organelles enriched in specific enzymes, aiding in enzyme purification.
- The cytoplasm is organized by the dynamic cytoskeleton, consisting of actin filaments, microtubules, and intermediate filaments, which provide structure and organization to the cell.
- The endomembrane system segregates metabolic processes and facilitates transport mechanisms like exocytosis and endocytosis.
- Supramolecular complexes are held together by noncovalent interactions, such as hydrogen bonds, ionic interactions, van der Waals interactions, and the hydrophobic effect, producing unique structures.
- Studying isolated cellular components in vitro may overlook important interactions that occur in living cells, as molecules may behave differently in vivo and in vitro.
- Cells use a relatively small set of carbon-based metabolites to create polymeric machines, supramolecular structures, and information repositories.
- The observed universality of chemical intermediates and transformations supports the understanding that all organisms share a common evolutionary origin.
- The four most abundant elements in living organisms are hydrogen, oxygen, nitrogen, and carbon, which make up more than 99% of the mass of most cells, due to their ability to efficiently form strong bonds.
- The lightest elements form the strongest bonds, and the biochemical unity is based on the shared evolutionary origin of organisms.
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Test your knowledge of key milestones in biochemistry and cellular foundations with this quiz. From the discovery of the double helical structure of DNA to the development of monoclonal antibodies, explore important events that have shaped our understanding of cellular processes and biochemical pathways.