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Module 4 Quiz

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45 Questions

Define Simple Diffusion and how does it differ from osmosis?

Simple Diffusion is the movement of nonpolar compounds down their concentration gradient, where as, osmosis is the movement of water

What determines the free energy change for the transport of an uncharged solute from concentration C1 to C2?

The free energy change is determined by the concentration difference (C1-C2).

How is passive transport defined in membrane biochemistry?

Passive transport involves the movement of molecules down their concentration gradient, without the use of energy hence making it a spontaneous process.

Explain the formula for free energy (ΔG) with regards to the transport of uncharged solutes through membranes.

The formula for free energy change (ΔG) for the transport of uncharged solutes from concentration C1 to C2 is ΔG = ΔG0' + RT ln ([P]/[S]), where R is the gas constant, T is the temperature in Kelvin, and ln represents the natural logarithm. [P] and [S] represent the concentrations of the solute on the two sides of the membrane.

How do polar compounds and ions cross a membrane in the context of membrane transport?

Polar compounds and ions cannot cross the membrane unassisted due to the hydrophobic nature of the lipid bilayer. They require specific membrane protein carriers to facilitate their transport across the membrane.

What is the unit of the gas constant R in the free energy change equation?

kJ.mol-1.K-1

What factors govern the rates of diffusion across lipid bilayers?

Size, polarity, ionicity

What is the permeability ratio of bilayer for urea to water?

100:1

How does the polarity of molecules affect their permeability through a lipid bilayer?

Bilayers are more permeable to nonpolar molecules.

What is the function of the depsipeptide ionophore Valinomycin?

Shuttles K+ ions

Why are ionophores like Valinomycin considered important in antibiotic function?

They kill other cells by dissipating their ion gradients

How do transporters lower the activation energy in facilitated transport?

Transporters lower the activation energy by binding solutes via weak, noncovalent interactions, which counteracts the positive ΔG of dehydration, thereby forming a transmembrane pathway lined with polar amino acids.

What is the relationship between the rate constant k and the activation energy ΔG‡ in transition state theory?

k is inversely and exponentially related to ΔG‡

How do transporters and ion channels differ in their mechanisms of transport?

Transporters bind their substrates through non-covalent interactions, are saturable, and have a gate on either side of the membrane that is never open at the same time, whereas ion channels provide an aqueous path through the membrane for inorganic ions to diffuse.

What is the significance of the transition state in enzyme-catalyzed reactions and facilitated transport?

The transition state is a high-energy intermediate state that is similar in both enzyme-catalyzed reactions and facilitated transport, requiring an energy input (activation energy, ΔG‡) to overcome the energy barrier.

Why do transporters have a limited rate of transport, unlike ion channels?

Because they are saturable, meaning that the rate of transport does not increase significantly above a certain concentration of substrates.

Describe the structure of Gramicidin A and its role in ion transport.

Gramicidin A is a β-helical peptide that forms a dimer, creating a channel with a 0.4 nm pore, allowing monovalent cations like Na+ and K+ to pass through.

What is the energy barrier to transport across membranes, and what does it involve?

The energy barrier is the activation energy required to transport a polar or charged solute across a membrane, involving the stripping of hydration layers and movement across the non-polar membrane environment.

What is the function of the β6.3 helix in Gramicidin A?

The β6.3 helix is a tertiary structure that forms a wide channel, allowing ions to pass through.

How does Gramicidin A's mechanism of action relate to its use as a topical bactericidal agent?

Gramicidin A forms a channel in the bacterial membrane, allowing ions to pass through and disrupting the bacterial membrane potential, ultimately leading to bacterial death.

what is the structure of valinomycin

cyclic structure of L-lactate, D/L-valine, D-hydroxy-isovalerate

how does the K+ bind to valinomycin?

k+ binds to the size-selective cavity of valinomycin through carbonyl coordination, which shields charges.

how is valinomycin an ionophore?

its a compound that shuttles an ion (K+) across the membrane

Explain how and why valinomycin forms a lipid-soluble complex.

When K+ is bound to the valinomycin cavity, its non-polar groups interact with acyl chains to form a lipid-soluble complex that shuttles the ion across the membrane.

What is a depsipeptide?

A type of peptide in which one or more of the amide group is replaced with an ester.

describe transporters in relation to enzymes

analogous

list types of passive transport

  • osmosis
  • simple diffusion
  • facilitated diffusion

What is the primary function of the GLUT1 glucose transporter in erythrocytes?

It facilitate the uptake of glucose into erythrocytes through passive transport.

What is v0 in michaelis menten eqn?

the initial velocity of substrate transport into the cell at various external substrate concentrations

How do the outward-facing (T1) and inward-facing (T2) conformations of the transporter facilitate substrate transport?

The outward-facing (T1) conformation of the transporter binds to the substrate, and then undergoes a conformational change to the inward-facing (T2) conformation, allowing the substrate to be released into the cell.

What is the immediate metabolic fate of glucose that enters the cell?

Immediate metabolism of glucose in the cell

What is the Kt value for GLUT1, a glucose transporter, and what is its significance?

3 mM; It represents the substrate concentration at half of the maximum velocity (½Vmax)

Explain the hallmarks of passive transport exhibited by GLUT1.

  1. High rate of diffusion down a concentration gradient
  2. Saturable transport (reaches Vmax)
  3. Stereospecific for D-glucose

How does GLUT1's transport of glucose relate to cellular glucose metabolism?

GLUT1 transports glucose into the cell as cellular glucose is immediately metabolized, preventing glucose accumulation inside.

Describe the membrane topology of glucose transporters in the Major Facilitator (MF) superfamily.

Glucose transporters in the MF superfamily are integral membrane proteins with 12 transmembrane (TM) segments. 4 (possibly 5) amphipathic α-helices form a hydrophilic channel for glucose transport, with charged/polar amino acids lining the channel.

Explain the Gated Pore Mechanism of glucose transport with reference to GLUT1.

Glucose transport via the Gated Pore Mechanism in GLUT1 involves cycling between T1 and T2 conformations. In T1, the glucose-binding site is exposed on the outer membrane surface, while in T2, it is exposed on the inner surface.

How many glucose transporters are encoded by the human genome, and what is their family designation?

12 glucose transporters are encoded by the human genome, belonging to the Major Facilitator superfamily. They are commonly referred to as GLUT1 to GLUT12.

Where is GLUT1 predominantly found in the body, and what is its role at this location?

GLUT1 is mainly present in erythrocytes and the Blood-Brain Barrier. It transports glucose into erythrocytes and facilitates glucose transport across the blood-brain barrier.

What differentiates the two conformations of GLUT1 (T1 and T2) in terms of the exposed glucose-binding site?

The T1 conformation exposes the glucose-binding site on the outer membrane surface, while the T2 conformation exposes it on the inner surface.

How do members of the GLUT family differ in terms of tissue distribution, kinetic properties, and regulation?

The GLUT family members (GLUT1-GLUT12) exhibit differences in tissue distribution, kinetic properties, and regulation. Each member has a distinct pattern of expression and functional characteristics.

What is the shape of the pore in bacterial K+ channels, and what is its significance?

Cone-shaped structure, allowing K+ to pass through due to the constriction size.

What is the role of carbonyl oxygen atoms in the peptide backbone of K+ channels?

They interact with dehydrated K+, replacing interactions with H2O, optimizing for K+ ions.

How do K+ ions move through the channel, and what prevents them from overcrowding?

K+ ions move rapidly through the channel in single file, hopping between sites, and repulse each other to prevent overcrowding.

What is the significance of the size of the selectivity filter in K+ channels?

It allows K+ ions to pass through while excluding smaller ions like Na+, based on size.

How many binding sites are available for K+ ions in the channel, and how are they occupied?

There are 4 sites, but 2 of them are occupied by H2O molecules, leaving 2 sites for K+ ions.

Test your knowledge on transport processes, including diffusion and facilitated diffusion in membrane biochemistry. Learn about the types of membrane transport for nonpolar compounds, polar compounds, and ions, as well as the concepts of simple diffusion and osmosis.

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