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Questions and Answers
What is the primary goal of bacterial transformation in this lab exercise?
What is the primary goal of bacterial transformation in this lab exercise?
- To calculate bacterial growth rates
- To add the gene for green fluorescent protein (GFP) to bacterial DNA (correct)
- To eliminate microorganisms
- To study bacteria in their natural environment
Transgenesis refers to the process of adding foreign genes to an organism.
Transgenesis refers to the process of adding foreign genes to an organism.
True (A)
What does pGLO stand for?
What does pGLO stand for?
Plasmid for Green Fluorescent Protein
During bacterial transformation, __________ is used to facilitate the uptake of plasmid DNA by bacterial cells.
During bacterial transformation, __________ is used to facilitate the uptake of plasmid DNA by bacterial cells.
Match the following components of the pGLO system with their functions:
Match the following components of the pGLO system with their functions:
Which step in bacterial transformation helps the bacterial cells take up foreign DNA?
Which step in bacterial transformation helps the bacterial cells take up foreign DNA?
The role of restriction enzymes is solely to cut foreign DNA from other organisms.
The role of restriction enzymes is solely to cut foreign DNA from other organisms.
What is the purpose of agarose gel electrophoresis in this lab?
What is the purpose of agarose gel electrophoresis in this lab?
What type of ends do restriction enzymes create when they generate sticky ends?
What type of ends do restriction enzymes create when they generate sticky ends?
Blunt ends have overhangs that can hybridize.
Blunt ends have overhangs that can hybridize.
What is the role of DNA ligase in recombinant DNA technology?
What is the role of DNA ligase in recombinant DNA technology?
The restriction enzyme EcoRI cuts DNA and generates sticky ends with a _____ overhang.
The restriction enzyme EcoRI cuts DNA and generates sticky ends with a _____ overhang.
Match the following terms with their definitions:
Match the following terms with their definitions:
Which of the following correctly describes complementary sticky ends?
Which of the following correctly describes complementary sticky ends?
What primarily determines the direction of a molecule's migration in electrophoresis?
What primarily determines the direction of a molecule's migration in electrophoresis?
All fragments cut by the same restriction enzyme will have different sticky ends.
All fragments cut by the same restriction enzyme will have different sticky ends.
What is pGLO in the context of recombinant plasmids?
What is pGLO in the context of recombinant plasmids?
Nucleic acids can be separated by charge, size, and shape in gel electrophoresis.
Nucleic acids can be separated by charge, size, and shape in gel electrophoresis.
Name two types of gel commonly used in gel electrophoresis.
Name two types of gel commonly used in gel electrophoresis.
What characteristic should the selected colonies have for high transformation efficiency?
What characteristic should the selected colonies have for high transformation efficiency?
To achieve high transformation efficiency, bacteria must be actively reproducing.
To achieve high transformation efficiency, bacteria must be actively reproducing.
The migration of a molecule in electrophoresis is influenced by its charge and __________.
The migration of a molecule in electrophoresis is influenced by its charge and __________.
Match the following components with their roles in gel electrophoresis:
Match the following components with their roles in gel electrophoresis:
What volume of the cell suspension should be transferred to the –pGLO tube?
What volume of the cell suspension should be transferred to the –pGLO tube?
What primarily allows for the separation and identification of molecule types during electrophoresis?
What primarily allows for the separation and identification of molecule types during electrophoresis?
High molecular weight proteins migrate faster than low molecular weight proteins in a gel.
High molecular weight proteins migrate faster than low molecular weight proteins in a gel.
Match the following equipment with their uses:
Match the following equipment with their uses:
What should be done after allowing the molecules to migrate for a desired time in gel electrophoresis?
What should be done after allowing the molecules to migrate for a desired time in gel electrophoresis?
Which action should be avoided to prevent cell death during the transformation process?
Which action should be avoided to prevent cell death during the transformation process?
Plasmid DNA should be added to the -pGLO cell suspension tube.
Plasmid DNA should be added to the -pGLO cell suspension tube.
How many bacterial colonies should be picked with the sterile loop?
How many bacterial colonies should be picked with the sterile loop?
What is the total size of the pGLO plasmid?
What is the total size of the pGLO plasmid?
Only one EcoRV restriction site exists in the pGLO sequence.
Only one EcoRV restriction site exists in the pGLO sequence.
What are the sequences for the HindIII restriction site?
What are the sequences for the HindIII restriction site?
The EcoRV restriction site is represented by the sequence ______.
The EcoRV restriction site is represented by the sequence ______.
Which restriction enzyme cuts at base pair site 1 on the pGLO map?
Which restriction enzyme cuts at base pair site 1 on the pGLO map?
Match the restriction enzymes with their corresponding cut sites on the pGLO map:
Match the restriction enzymes with their corresponding cut sites on the pGLO map:
Circular molecules of DNA, such as plasmids, have a definitive start point for numbering base pairs.
Circular molecules of DNA, such as plasmids, have a definitive start point for numbering base pairs.
How many bands are detected when pGLO is digested with HindIII alone?
How many bands are detected when pGLO is digested with HindIII alone?
What was expected to be observed on the –pGLO LB plate?
What was expected to be observed on the –pGLO LB plate?
The +pGLO LB/amp plate should show more growth than the –pGLO LB plate.
The +pGLO LB/amp plate should show more growth than the –pGLO LB plate.
What is one reason for seeing fewer colonies on the +pGLO LB/amp plate compared to the –pGLO LB plate?
What is one reason for seeing fewer colonies on the +pGLO LB/amp plate compared to the –pGLO LB plate?
To estimate the transformation efficiency, compare the number of transformants produced on the +pGLO LB/amp plate to the total bacterial cells in the ______ plate.
To estimate the transformation efficiency, compare the number of transformants produced on the +pGLO LB/amp plate to the total bacterial cells in the ______ plate.
Match the following experimental plates with their expected outcomes:
Match the following experimental plates with their expected outcomes:
Flashcards
Bacterial Transformation
Bacterial Transformation
Adding a gene from one organism to a bacterial cell, changing the bacteria's traits.
Transgenesis
Transgenesis
Adding a foreign gene to an organism, expressing the gene product, and altering a trait.
pGLO plasmid
pGLO plasmid
A plasmid (small circular DNA) used to carry and express a specific gene.
Restriction enzymes
Restriction enzymes
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Recombinant DNA technology
Recombinant DNA technology
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GFP (green fluorescent protein)
GFP (green fluorescent protein)
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CaCl2 Bacterial Transformation
CaCl2 Bacterial Transformation
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Plasmid vector
Plasmid vector
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Sticky ends
Sticky ends
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Blunt ends
Blunt ends
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5' overhang
5' overhang
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3' overhang
3' overhang
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Recombinant DNA
Recombinant DNA
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DNA ligase
DNA ligase
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Restriction site
Restriction site
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Control Plate
Control Plate
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Negative Control
Negative Control
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Positive Control
Positive Control
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Transformation Efficiency
Transformation Efficiency
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Why less colonies on +pGLO LB/amp plate?
Why less colonies on +pGLO LB/amp plate?
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Electrophoresis
Electrophoresis
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Gel Matrix
Gel Matrix
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Migration Direction
Migration Direction
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Migration Rate
Migration Rate
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Biopolymer Separation
Biopolymer Separation
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Nucleic Acid Separation
Nucleic Acid Separation
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Agarose or Polyacrylamide
Agarose or Polyacrylamide
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Native vs. Denaturing
Native vs. Denaturing
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Transfer Pipette
Transfer Pipette
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Bacterial Cell Suspension
Bacterial Cell Suspension
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Why Select Large Colonies?
Why Select Large Colonies?
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Sterile Loop
Sterile Loop
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Dispersing Bacterial Cells
Dispersing Bacterial Cells
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Gentle Aspiration
Gentle Aspiration
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Pipetting Up and Down
Pipetting Up and Down
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Restriction Enzyme Digest Map
Restriction Enzyme Digest Map
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pGLO Plasmid Size
pGLO Plasmid Size
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Arbitrary Start Point
Arbitrary Start Point
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Restriction Site 1 in pGLO
Restriction Site 1 in pGLO
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What does 'below 1000' mean?
What does 'below 1000' mean?
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How are bands created?
How are bands created?
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EcoRV's Restriction Site
EcoRV's Restriction Site
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HindIII's Restriction Site
HindIII's Restriction Site
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Study Notes
Bacterial Transformation
- Bacterial transformation is a method of transgenesis
- The goal is to add a foreign gene to an organism
- Transgenesis results in transgenic organisms
- Genetic engineering involves cloning and modifying a gene before insertion into the organism
- Bacteria are suitable for transgenesis due to their simplicity, easy lab manipulation, asexual reproduction, rapid division
- Bacteria can't be used for all applications
Learning Objectives
- Describe transgenesis (using examples)
- Describe CaCl2 bacterial transformation process and function of each step
- Describe plasmid vectors and components of pGLO
- List control treatments and explain their purpose
- Analyze pGLO transformation experiment results
- Describe a restriction enzyme (endonuclease) and its role
- Describe how restriction enzymes are used in recombinant DNA technology
- How to calculate fragment size from restriction digest map
- Describe electrophoresis and how DNA fragments are identified
- Use electrophoresis to separate DNA fragments
Introduction
- A bacterial transformation is a type of transgenesis technique
- Transgenesis aims to add a foreign gene, express its product, alter a trait, and pass the gene to offspring
- The introduced gene is cloned (amplified) and modified
- Bacteria are ideal for this process: unicellular, easy lab manipulation, asexual, rapid division
- Multicellular organisms (animals, plants) require more complex techniques for transgenesis
Lab 7 - Bacterial Transformation
- Overview: 2 lab periods to add GFP gene (from jellyfish) to bacterial genome using pGLO system
- Observe GFP expression via UV light exposure
- Introduce restriction enzymes for recombinant DNA technology
- Procedures: CaCl2 transformation, analyze pGLO transformation, restriction enzymes and electrophoresis.
pGLO System
- pGLO is a recombinant plasmid
- It carries GFP gene (gene of interest) along with a selectable marker (bla)
- Ori site for replication/replication machinery
- araC for regulated expression, and other components
- GFP produces green fluorescent protein when exposed to UV light
- bla provides antibiotic resistance (acts as a selectable marker, for survival on the plate)
- pGLO allows the transfer of the GFP gene to bacteria, which then express the GFP protein
Restriction Enzymes
- Restriction enzymes are essential tools for genetic engineering
- They are endonucleases that cut DNA at specific sequences (restriction sites)
- Restriction sites are typically 4-8 base pairs long
- Sticky vs Blunt ends
Gel Electrophoresis
- Gel electrophoresis is used to separate biopolymers like proteins and nucleic acids based on their charge, size, and shape
- The gel acts as a molecular filter with microscopic pores
- The molecules migrate towards the positive electrode. Their rate is determined by size and charge.
- Visualized with staining agents
pGLO Restriction Digest
- The experiment involves different restriction enzyme digests.
- Different solutions with varying concentrations are combined. Each set of solutions is tested.
pGLO Transformation
- Prepare cell suspensions of E. coli bacteria
- Use a sterile technique
- Transformation solution, pGLO plasmid DNA and mix cell suspension with gentle pipetting
- Incubate on ice for 10 minutes
- Heat shock cells at 42 degrees Celcius for 50 seconds
- Place tubes back on ice and incubate for 2 minutes
- Plate bacteria on LB, LB/Amp, and LB/Amp/ara plates.
Bacterial Growth Characterization
- Colony number (count of colonies)
- Colonies size (using a ruler)
- Colony morphology (circular or irregular shape, or glossy or mat)
- Fluorescence under UV light (yes or no)
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