Autophagy Process

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Questions and Answers

What is the typical size range of antisense oligonucleotides (ASOs)?

  • 10 to 20 nucleotides
  • 8 to 50 nucleotides (correct)
  • 5 to 10 nucleotides
  • 20 to 100 nucleotides

What is the main mechanism of RNAse H-dependent ASOs?

  • mRNA degradation (correct)
  • Modulation of the splicing process
  • Inhibition of translation
  • Blocking of microRNAs

What was modified in the first generation of ASOs?

  • The ribose sugar
  • The furanose ring
  • The oxygen atom in the backbone (correct)
  • The phosphate linkages

What is the result of the mutations in the DMD gene?

<p>A prematurely truncated, unstable dystrophin protein (C)</p> Signup and view all the answers

What is the goal of antisense oligonucleotides-based therapy for DMD?

<p>To treat DMD (D)</p> Signup and view all the answers

What type of disease is Duchenne muscular dystrophy?

<p>X-linked recessive disease (A)</p> Signup and view all the answers

What is the main characteristic of Duchenne muscular dystrophy?

<p>Progressive muscular degeneration and weakness (A)</p> Signup and view all the answers

What is the function of RNAse H?

<p>To degrade mRNA (C)</p> Signup and view all the answers

What is the main difference between the first and second generation of ASOs?

<p>The type of modifications in the ribose sugar (C)</p> Signup and view all the answers

What is the outcome of the modifications made in the third generation of ASOs?

<p>Enhanced stability and better pharmacokinetic profiles (D)</p> Signup and view all the answers

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Study Notes

Gene Therapy Strategies

  • Gene augmentation: adding a new normal protein-coding gene to cells with non-functional gene
    • Can be classified into two categories: gene replacement therapy and gene addition therapy
  • Gene silencing: the use of DNA or gene editing technologies to enhance the function of a healthy person
    • Examples: increased muscle mass, improved oxygen delivery, and accelerated recovery

Gene Doping

  • The use of DNA or gene editing technologies to enhance the function of a healthy person
    • Banned by the World Anti-Doping Agency (WADA) for non-therapeutic forms of genetic manipulation
  • Examples: introducing genes that promote muscle growth, genes that encode for erythropoietin (EPO), and genes that promote tissue repair and regeneration

Gene Augmentation

  • Gene replacement therapy: the delivery of a correct copy of the gene to restore the production of a defective or missing protein
    • Example: Spinal Muscular Atrophy (SMA) gene replacement therapy
  • Gene addition therapy: the delivery of a protein-coding gene to improve cellular function and homeostasis
    • Example: autophagy gene addition therapy for neurodegenerative diseases

Gene Replacement Therapy

  • Spinal Muscular Atrophy (SMA) is a group of genetic disorders characterized by the degeneration of anterior horn cells and subsequent muscle atrophy and weakness
    • Caused by mutations in the SMN1 gene, which produces a functional protein essential for motor neuron development
  • SMA patients have a non-functional SMN1 protein, and the only functional protein is produced by the SMN2 gene
    • The number of copies of the SMN2 gene modifies the severity of the condition
  • Example: Zolgensma, a gene replacement therapy for SMA, delivers a functional copy of the SMN1 gene to motor neuron cells
    • FDA approved therapy with a marketing price of $2.125 million

Gene Addition Therapy

  • Autophagy is a highly regulated cellular process that facilitates nutrient recycling and degrades damaged organelles and proteins
    • Important in neurodegenerative diseases, where abnormal protein accumulation occurs
  • Mechanisms of autophagy:
    • Microautophagy: direct engulfment of cytosolic material through lysosomal invagination
    • Chaperone-mediated autophagy: selective degradation pathway targeting proteins with recognition motifs
    • Macroautophagy: formation of phagophore, autophagosome, and autolysosome to degrade cellular material
  • Example: Machado-Joseph disease (MJD) or Spinocerebellar Ataxia Type 3 (SCA3), a polyglutamine disease caused by an unstable expansion of a CAG repeat sequence in the ATXN3 gene
    • Upregulation of the autophagy pathway as a therapeutic strategy to clear mutant ataxin-3 and improve neuronal homeostasis

Gene Silencing

  • Methods of gene silencing:
    • Antisense oligonucleotides (ASOs)
    • RNA interference (RNAi)
  • Antisense oligonucleotides (ASOs):
    • Synthetic, unmodified or chemically modified, single-stranded nucleic acid molecules that hybridize to their target mRNA
    • Exert action through RNAse H-dependent or RNAse H-independent mechanisms
  • Example: Duchenne muscular dystrophy (DMD), an X-linked recessive disease caused by mutations in the DMD gene, resulting in a prematurely truncated dystrophin protein
    • Antisense oligonucleotides-based therapy for DMD

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