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What are the four main components that a central carbon atom is covalently bonded to in a generalised structure of an amino acid?
What are the four main components that a central carbon atom is covalently bonded to in a generalised structure of an amino acid?
carboxyl group, amino group, H atom, and unique organic side chain (R group)
What is the byproduct of the condensation reaction that forms a peptide bond between two amino acids?
What is the byproduct of the condensation reaction that forms a peptide bond between two amino acids?
water
What is the characteristic of the ends of a dipeptide formed through condensation reaction?
What is the characteristic of the ends of a dipeptide formed through condensation reaction?
N-terminal end has a free amino group, and C-terminal end has an unbound carboxyl group
What is the significance of essential amino acids in the human diet?
What is the significance of essential amino acids in the human diet?
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What is the difference between essential and non-essential amino acids?
What is the difference between essential and non-essential amino acids?
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What is the structural implication of the peptide bond formation between amino acids?
What is the structural implication of the peptide bond formation between amino acids?
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How does the genetic code provide instructions for the synthesis of proteins?
How does the genetic code provide instructions for the synthesis of proteins?
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What is the significance of codons in the genetic code?
What is the significance of codons in the genetic code?
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What is the function of lysozyme, an example of a polypeptide?
What is the function of lysozyme, an example of a polypeptide?
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What is the role of glucagon, another example of a polypeptide?
What is the role of glucagon, another example of a polypeptide?
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What is the function of myoglobin, a polypeptide found in muscle tissues?
What is the function of myoglobin, a polypeptide found in muscle tissues?
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Why are polypeptides necessary for the proper growth, maintenance, and repair of the body's tissues and organs?
Why are polypeptides necessary for the proper growth, maintenance, and repair of the body's tissues and organs?
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What determines the properties of the assembled polypeptides in amino acids?
What determines the properties of the assembled polypeptides in amino acids?
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What type of bonds are responsible for stabilizing the formation of secondary structure in proteins?
What type of bonds are responsible for stabilizing the formation of secondary structure in proteins?
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What is the primary structure of proteins composed of?
What is the primary structure of proteins composed of?
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What is the characteristic of R groups that are hydrophilic?
What is the characteristic of R groups that are hydrophilic?
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What is the role of hydrogen bonds in maintaining the tertiary structure of proteins?
What is the role of hydrogen bonds in maintaining the tertiary structure of proteins?
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What type of bonds are formed between oppositely charged ions in proteins?
What type of bonds are formed between oppositely charged ions in proteins?
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What is the result of the interaction between hydrophobic amino acids in proteins?
What is the result of the interaction between hydrophobic amino acids in proteins?
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How do hydrophilic polar amino acids and hydrophobic non-polar amino acids affect the tertiary structure of proteins?
How do hydrophilic polar amino acids and hydrophobic non-polar amino acids affect the tertiary structure of proteins?
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What is the significance of disulphide covalent bonds in proteins?
What is the significance of disulphide covalent bonds in proteins?
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What is the consequence of the interaction between R groups in the tertiary structure of proteins?
What is the consequence of the interaction between R groups in the tertiary structure of proteins?
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What is the significance of the hydrophilic exterior of insulin, and how does it allow the protein to interact with its surroundings?
What is the significance of the hydrophilic exterior of insulin, and how does it allow the protein to interact with its surroundings?
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What is the structure and function of collagen, and what are its components?
What is the structure and function of collagen, and what are its components?
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How does the structure of fibrous proteins differ from that of globular proteins?
How does the structure of fibrous proteins differ from that of globular proteins?
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What is the function of the hydrophobic interior of insulin, and how does it contribute to the protein's overall structure?
What is the function of the hydrophobic interior of insulin, and how does it contribute to the protein's overall structure?
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What are the specific residues responsible for the twisting of the polypeptide chains in collagen, and what type of bonds hold them together?
What are the specific residues responsible for the twisting of the polypeptide chains in collagen, and what type of bonds hold them together?
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What is the quaternary structure of a protein, and provide an example?
What is the quaternary structure of a protein, and provide an example?
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What is the difference between conjugated and non-conjugated proteins?
What is the difference between conjugated and non-conjugated proteins?
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What is the process involved in the formation of a protein's 3D shape?
What is the process involved in the formation of a protein's 3D shape?
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What are the characteristics of globular proteins, and what are their functions?
What are the characteristics of globular proteins, and what are their functions?
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What is the role of the haem group in haemoglobin, and how does it contribute to the protein's function?
What is the role of the haem group in haemoglobin, and how does it contribute to the protein's function?
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What is the difference between the quaternary structure of haemoglobin and its classification as a globular or fibrous protein?
What is the difference between the quaternary structure of haemoglobin and its classification as a globular or fibrous protein?
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Study Notes
General Structure of Amino Acids
- Central carbon (alpha carbon) covalently bonded to: carboxyl group, amino group, H atom, and unique organic side chain (R group)
- R group can be non-polar, polar, linear, or ringed, providing each amino acid with distinct chemical and physical properties
Condensation Reactions and Peptide Bonds
- Amino acids join together through condensation reactions to form dipeptides and longer chains
- Peptide bond formed when carboxyl group of one amino acid reacts with amino group of another amino acid
- Water is released as a byproduct, and the peptide bond is a type of covalent bond that is very stable
Properties of Peptide Chains
- N-terminal (amino terminal) end of the dipeptide has a free amino group not involved in the peptide bond
- C-terminal (carboxyl terminal) end of the dipeptide has an unbound carboxyl group
- One end of the protein must have an amine group, and the other end must have a carboxyl group
Dietary Requirements for Amino Acids
- Essential amino acids: cannot be produced by the body, must be obtained from food
- Non-essential amino acids: produced by the body from other amino acids or breakdown of proteins
Protein Structures
Globular Proteins
- Compact and globular shape
- Hydrophilic exterior and hydrophobic interior
- Hydrophilic exterior allows reaction with water and other hydrophilic molecules in the blood
- Hydrophobic interior stabilizes the shape of the protein and maintains its globular shape
- Example: insulin
Fibrous Proteins
- Long and narrow shape (elongated)
- Repeating structures designed for strength and stability
- Insoluble in water
- Example: collagen, which forms the main component of connective tissue in animals
Quaternary Structure
- Arrangement and interaction of two or more polypeptide chains to form a functional protein
- Example: haemoglobin, which has four individual polypeptide chains (2 alpha chains and 2 beta chains)
Conjugated and Non-Conjugated Proteins
- Non-conjugated proteins: consist only of polypeptide subunits
- Conjugated proteins: have non-protein components such as metal ions or carbohydrates in addition to polypeptide subunits
Protein Folding and Classification
- Polypeptide chain is synthesized and undergoes protein folding to adopt a 3D shape critical for proper function
- Folding process influenced by hydrogen bonding, ionic bonding, hydrophobic interaction, sequence of amino acids, and cellular environment
- Classified as either globular or fibrous proteins based on shape, solubility, and function
Genetic Code and Protein Synthesis
- Genetic code specifies how information stored in DNA is translated into the sequence of amino acids that make up proteins
- Provides instructions for protein synthesis through transcription and translation
- Composed of codons, which are groups of three nucleotides that specify the type of amino acid or stop signal required
Examples of Polypeptides
- Lysozyme: 129 amino acids, present in tears and saliva, with antimicrobial properties
- Alpha-neurotoxins: 60-75 amino acids, present in snake venom, targeting and disrupting the nervous system
- Glucagon: 29 amino acid residues, regulating blood sugar levels by releasing glucose
- Myoglobin: 153 amino acid residues, oxygen-binding protein found in muscle tissues, facilitating storage and release of oxygen to muscle fibers
Chemical Diversity of Amino Acids
- R group of amino acids determines properties of the assembled polypeptides
- R groups can be hydrophobic (non-polar) or hydrophilic (polar/charged), attracting or repelling water molecules
Primary Structure of Proteins
- Primary structure: specific sequence of amino acids that are joined together to form a polypeptide chain
Secondary Structure of Proteins
- Secondary structure: local folding pattern that occurs within the polypeptide chain
- Alpha helices and beta pleated sheets formed through hydrogen bonding between amino acids
Tertiary Structure of Proteins
- Tertiary structure: further folding of the polypeptide chain, dependent on the interaction between R groups
- Interactions include hydrogen bonds, ionic bonds, disulfide covalent bonds, and hydrophobic interactions
Effect of Polar and Non-Polar Amino Acids on Tertiary Structure
- Hydrophilic polar amino acids face the aqueous environment
- Hydrophobic non-polar amino acids are protected in the core, minimizing unfavorable interactions with water molecules
- Results in a compact structure, increasing stability
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Description
Learn about the general structure of amino acids, including the central carbon atom and its bonds. Discover how amino acids join together through condensation reactions to form dipeptides and longer chains. Test your knowledge on the chemical and physical properties of amino acids and peptide bonds.