Amino Acids in Proteins

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Questions and Answers

Which amine is produced from the amino acid Histidine?

  • Histamine (correct)
  • Serotonin
  • Tyramine
  • Cadaverine

What occurs during the formation of a peptide bond?

  • Peptide bonds are formed between carbohydrates.
  • Amino acids lose a carbon atom.
  • An amine and a carboxylic acid condense with water loss. (correct)
  • Water is added to form proteins.

Which amino acid can form disulfide linkages?

  • Glutamate
  • Serotonin
  • Cysteine (correct)
  • Tyrosine

What is produced when amino acids react with alcohols?

<p>Esters (A)</p> Signup and view all the answers

Which function is NOT associated with amino acids?

<p>Energy production (C)</p> Signup and view all the answers

Which amino acids are purely glucogenic?

<p>Alanine and valine (A)</p> Signup and view all the answers

What is the primary characteristic of a zwitterion?

<p>It possesses both positive and negative charges with a net charge of zero. (C)</p> Signup and view all the answers

Which of the following amino acids can be both ketogenic and glucogenic?

<p>Isoleucine (B)</p> Signup and view all the answers

At what pH does an amino acid reach its isoelectric point?

<p>The pH at which the amino acid molecule carries no net charge. (C)</p> Signup and view all the answers

What happens to the -COO- group in an acidic solution?

<p>It gains a proton to form a free -COOH group. (D)</p> Signup and view all the answers

What is the result of the ninhydrin test for amino acids?

<p>Formation of reduced ninhydrin, which is deep violet. (C)</p> Signup and view all the answers

Which property is true for all amino acids except glycine?

<p>They possess asymmetric α-carbon atoms. (C)</p> Signup and view all the answers

During decarboxylation of amino acids, what is primarily formed?

<p>Amine (D)</p> Signup and view all the answers

Which of the following amino acids is classified as a basic amino acid?

<p>Arginine (C)</p> Signup and view all the answers

Which of these amino acids can be synthesized by the human body?

<p>Alanine (C)</p> Signup and view all the answers

What characteristic defines an aromatic amino acid?

<p>Presence of a benzene ring in the side chain (A)</p> Signup and view all the answers

Which amino acid is considered purely ketogenic?

<p>Lysine (B)</p> Signup and view all the answers

Among the following, which amino acid is classified as semi-essential?

<p>Glutamine (D)</p> Signup and view all the answers

Which group of amino acids forms hydrogen bonds with water due to their side chains?

<p>Polar amino acids (A)</p> Signup and view all the answers

What type of amino acids are glutamic acid and aspartic acid classified as?

<p>Acidic amino acids (D)</p> Signup and view all the answers

Which of the following amino acids contains an SH group?

<p>Cysteine (C)</p> Signup and view all the answers

Which type of amino acid is characterized by having a hydroxyl group in its side chain?

<p>Aliphatic neutral amino acids (B)</p> Signup and view all the answers

Which property distinguishes α-amino acids from other amino acids?

<p>Having an amino group attached to the α-carbon (A)</p> Signup and view all the answers

Which classification of amino acids involves the structural distinction based on the R group?

<p>Chemical structure classification (C)</p> Signup and view all the answers

Which of the following amino acids is considered aromatic?

<p>Tryptophan (D)</p> Signup and view all the answers

What type of amino acids includes those that have a carboxyl group in their side chain?

<p>Aliphatic acidic amino acids (A)</p> Signup and view all the answers

Which amino acid type is classified based on the presence of a hetero atom in the ring but not a benzene ring?

<p>Heterocyclic amino acids (A)</p> Signup and view all the answers

Which of the following amino acids is neutral and simple with no functional group in its side chain?

<p>Glycine (B)</p> Signup and view all the answers

What is the configuration of naturally occurring amino acids in proteins?

<p>L-configuration (A)</p> Signup and view all the answers

Flashcards

Amino Acid Classification by Polarity

Amino acids are categorized based on the polarity of their side chains (R groups). Polar R groups can form hydrogen bonds with water, while non-polar R groups cannot.

Essential Amino Acids

Essential amino acids cannot be synthesized by the body and must be obtained from food. Their deficiency impacts health and protein synthesis.

Non-Essential Amino Acids

Non-essential amino acids can be produced by the body and are not required in the diet.

Semi-Essential Amino Acids

Semi-essential amino acids are produced by the body, but insufficiently for optimal health, especially in children.

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Aromatic Amino Acids

Amino acids with a benzene ring side chain, like phenylalanine and tyrosine.

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Heterocyclic Amino Acids

Amino acids with a ring structure in their side chains containing atoms other than carbon, such as tryptophan and histidine.

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Polar Amino Acids

Amino acids with side chains that are polar (hydrophilic) and can form hydrogen bonds with water.

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Nonpolar Amino Acids

Amino acids with side chains that are nonpolar (hydrophobic) and cannot form hydrogen bonds with water.

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Purely Ketogenic Amino Acid

Amino acids that enter the metabolic pathway of ketone bodies, meaning they can produce ketone bodies.

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Amino Acid

The building blocks of proteins, found in all living cells. There are 20 commonly found in proteins.

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Protein

Large molecules made from long chains of amino acids (polypeptides).

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α-Amino Acid

An amino acid where the amino group is attached to the carbon atom next to the carboxyl group.

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L-Amino Acid

A type of amino acid with a specific spatial arrangement (left-handed form).

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Chirality (of amino acids)

Amino acid molecules have a non-superimposable mirror image, and the alpha carbon (except glycine) has 4 different groups attached to it

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Amino Acid Classification (by R-group)

Categorization of amino acids based on the structure of their side chain (R group).

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Aliphatic Amino Acids

Amino acids with non-aromatic, hydrocarbon side chains (not Rings).

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Aromatic Amino Acids

Amino acids with benzene ring in their side chains.

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Neutral Aliphatic Amino Acids

A type of amino acid with a non polar side chain, no functional group.

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Acidic Amino Acids

Amino acids with a carboxyl group in their side chain.

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Basic Amino Acids

Amino acids with an amino group in their side chain.

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Amino Acid Classification

Amino acids are classified based on their metabolic breakdown products.

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Glucogenic Amino Acids

These amino acids can be broken down into glucose.

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Ketogenic Amino Acids

These amino acids can be broken down into ketone bodies.

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Ketogenic and Glucogenic Amino Acids

These amino acids can be broken down into both glucose and ketone bodies.

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Amino Acid Structure

Amino acids contain a central carbon atom bonded to an amino group, a carboxyl group, a hydrogen atom, and a variable side chain (R group).

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Optical Isomers

Amino acids exist as L- and D- isomers, but only L-isomers are found in proteins.

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Amino Acid Physical Properties

Amino acids are colorless, crystalline solids, insoluble in nonpolar solvents, and soluble in polar solvents and they have a high melting point.

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Zwitterion

The ionic form of an amino acid with both a positive and a negative charge at a particular pH (isoelectric point).

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Isoelectric Point (pI)

The pH at which an amino acid has a net zero charge.

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Acid-Base Properties

Amino acids can act as both acids and bases.

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Ninhydrin Test

A chemical test used to detect the presence of amino acids.

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Decarboxylation

A chemical reaction that removes a carboxyl group from an amino acid, producing an amine.

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Amino Acid Decarboxylation

The process where amino acids lose carbon dioxide (CO2) to produce amines.

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Decarboxylation of Histidine

Histidine transforms into Histamine and releases CO2.

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Decarboxylation of Tyrosine

Tyrosine converts to Tyramine while releasing CO2.

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Decarboxylation of Lysine

Lysine forms Cadaverine and CO2.,

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Carboxylate Ion Formation

The process where the carboxyl group of an amino acid loses a hydrogen ion (H+).

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Esterification

Reaction between amino acids and alcohols to form esters.

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Peptide Bond Formation

Amino acids link together via condensation to form peptides. Water is released.

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Disulfide Linkage

A covalent bond formed between cysteine or other sulfur-containing molecules via SH side chains.

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Protein Formation

Many amino acids join to form polypeptide chains and proteins, through peptide bonds.

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L-α-amino acids

Essential for various cellular functions (nerve impulses, synthesis of important molecules).

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Study Notes

Amino Acids

  • Proteins are large molecules composed of 20 amino acids linked in long chains called polypeptides.
  • Amino acids are the building blocks for proteins found in all living cells.
  • There are about 300 amino acids that occur in nature.
  • Only 20 amino acids enter protein synthesis.
  • Amino acids in proteins are in the L configuration.

Amino Acid Structure

  • Amino acids have an amino group (NHâ‚‚), a carboxyl group (COOH), and a side chain (R group) attached to a central carbon atom.
  • The side chain (R group) differentiates the 20 different amino acids.

Amino Acids in Proteins

  • All naturally occurring amino acids in proteins are α-amino acids.
  • Amino acids occur in L-form (left-handed).
  • All amino acids except glycine have four different groups attached to their α carbon, which makes them chiral.

Classification of Amino Acids

  • Based on chemical structure (R group): Aliphatic (non-ring structure), Aromatic (benzene ring), Heterocyclic (ring with non-carbon atoms).
  • Based on polarity: Polar (hydrophilic) or Nonpolar (hydrophobic).
  • Based on nutritional requirements: Essential (cannot be synthesized by the body), Nonessential (can be synthesized by the body), Semi-essential (formed by the body but not in sufficient quantities in children).
  • Based on metabolic properties: Purely ketogenic (only form ketone bodies), Purely glucogenic (only form glucose), ketogenic and glucogenic (form both).

Physical Properties

  • Colorless and crystalline in nature
  • Melting point above 200°C
  • Soluble in polar solvents and insoluble in nonpolar solvents.
  • Except glycine, all amino acids have optical isomers stable due to asymmetrical α carbon atoms.
  • They can exhibit colloidal nature and denaturing properties, in addition to enzymatic activities.

Acid-Base Properties

  • Amino acids exhibit ionic behavior at different pH levels.
  • A zwitterion is formed when the carboxyl group loses a proton and the amino group gains one.
  • Zwitterions have both positive and negative charges with a net charge of zero.

Isoelectric Point (pI)

  • The pH at which an amino acid has no net electrical charge.
  • Amino acids are amphoteric (having both acidic and basic properties).
  • It depends on the chemical structure and polarity.

Chemical Properties

  • Ninhydrin test: Used to detect amino acids.
  • Decarboxylation: Removal of carboxyl groups from amino acids.
  • Reaction with alkalis: Formation of carboxylate ions.
  • Reaction with alcohols: Formation of esters.
  • Formation of peptide bonds: Condensation of amino and carboxyl groups forming amides with the loss of water.
  • Disulfide linkages: Covalent bonds formed between sulfur-containing amino acids (cysteine).

Functions of Amino Acids

  • Participate in nerve transmission (e.g., glutamate, serotonin, dopamine).
  • Biosynthesis of various compounds (porphyrins, purines, pyrimidines, urea).
  • Synthesize hormones (e.g., thyroid hormones, adrenaline).
  • Constituents of peptides, hormones, neurotransmitters, and neuromodulators.

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