Proteins & Amino Acids

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Questions and Answers

The basic building blocks of proteins are:

  • Nucleotides
  • Monosaccharides
  • Fatty acids
  • Amino acids (correct)

Which part of an amino acid distinguishes it from other amino acids?

  • R-group (side chain) (correct)
  • Amino group
  • Alpha carbon
  • Carboxyl group

A peptide bond is formed between the:

  • Carboxyl group of one amino acid and the amino group of another (correct)
  • Side chains of two amino acids
  • Phosphate group and sugar
  • Sugar and base

An amino acid with a nonpolar side chain is:

<p>Valine (D)</p> Signup and view all the answers

An amino acid with a negatively charged side chain at physiological pH is:

<p>Aspartic acid (A)</p> Signup and view all the answers

Which amino acid contains a thiol (-SH) group?

<p>Cysteine (A)</p> Signup and view all the answers

Which amino acid is classified as an imino acid?

<p>Proline (C)</p> Signup and view all the answers

In a protein, the amino acids are linked together by

<p>Peptide bonds (B)</p> Signup and view all the answers

A protein is a polymer of

<p>Amino acids (A)</p> Signup and view all the answers

Which of the following is NOT a function of proteins?

<p>Energy storage (B)</p> Signup and view all the answers

The primary structure of a protein is its:

<p>Amino acid sequence (A)</p> Signup and view all the answers

Which type of bond stabilizes the primary structure of a protein?

<p>Peptide bond (D)</p> Signup and view all the answers

Secondary protein structures are stabilized by:

<p>Hydrogen bonds (D)</p> Signup and view all the answers

Which of the following is a type of secondary protein structure?

<p>Alpha-helix (A)</p> Signup and view all the answers

Beta-pleated sheets are characterized by:

<p>Zigzag arrangement of polypeptide chains (B)</p> Signup and view all the answers

A beta-turn is a type of secondary structure that:

<p>Reverses the direction of a polypeptide chain (A)</p> Signup and view all the answers

The amino acid commonly found in beta-turns is

<p>Proline (D)</p> Signup and view all the answers

The overall three-dimensional shape of a protein is its:

<p>Tertiary structure (A)</p> Signup and view all the answers

A protein domain is:

<p>A distinct structural unit of a polypeptide (B)</p> Signup and view all the answers

Which type of interaction is NOT involved in stabilizing tertiary structure?

<p>Peptide bonds (B)</p> Signup and view all the answers

Hydrophobic interactions in proteins cause nonpolar amino acids to cluster:

<p>In the interior of the protein (D)</p> Signup and view all the answers

The quaternary structure of a protein describes:

<p>The arrangement of subunits (D)</p> Signup and view all the answers

Hemoglobin is an example of a protein with:

<p>Quaternary structure (D)</p> Signup and view all the answers

The process by which a polypeptide chain acquires its functional 3D shape is called:

<p>Protein folding (D)</p> Signup and view all the answers

Proteins that assist in the folding of other proteins are called:

<p>Chaperones (B)</p> Signup and view all the answers

Misfolded proteins can be associated with:

<p>Protein aggregation and disease (C)</p> Signup and view all the answers

Prion diseases are caused by:

<p>Misfolded proteins (D)</p> Signup and view all the answers

Denaturation of a protein involves the disruption of:

<p>Secondary and tertiary structures (B)</p> Signup and view all the answers

Which of the following is a denaturing agent?

<p>Heat (D)</p> Signup and view all the answers

Proteins that are elongated and often have a structural role are classified as:

<p>Fibrous proteins (A)</p> Signup and view all the answers

Keratin and collagen are examples of:

<p>Fibrous proteins (D)</p> Signup and view all the answers

Most enzymes are classified as:

<p>Globular proteins (B)</p> Signup and view all the answers

Proteins that catalyze biological reactions are called:

<p>Enzymes (D)</p> Signup and view all the answers

Which of the following is NOT a function of proteins?

<p>Energy storage (C)</p> Signup and view all the answers

Hemoglobin is classified as a:

<p>Transport protein (D)</p> Signup and view all the answers

The process of synthesizing RNA from a DNA template is called:

<p>Transcription (A)</p> Signup and view all the answers

In transcription, the RNA molecule is synthesized in the:

<p>5' to 3' direction (D)</p> Signup and view all the answers

The DNA strand that has the same sequence as the RNA molecule (except for T instead of U) is the:

<p>Coding strand (B)</p> Signup and view all the answers

In eukaryotes, transcription occurs in the:

<p>Nucleus (B)</p> Signup and view all the answers

Which of the following is a post-transcriptional modification in eukaryotes?

<p>RNA splicing (C)</p> Signup and view all the answers

The non-coding sequences within a gene are called:

<p>Introns (C)</p> Signup and view all the answers

The addition of a 5' cap and 3' poly-A tail to mRNA in eukaryotes helps with:

<p>mRNA stability and translation (D)</p> Signup and view all the answers

The process of synthesizing a polypeptide chain from mRNA is called:

<p>Translation (B)</p> Signup and view all the answers

Translation occurs at the:

<p>Ribosome (D)</p> Signup and view all the answers

Each codon on mRNA specifies a particular:

<p>Amino acid (A)</p> Signup and view all the answers

A codon consists of how many nucleotides?

<p>3 (B)</p> Signup and view all the answers

The start codon AUG codes for the amino acid:

<p>Methionine (B)</p> Signup and view all the answers

Which site on the ribosome does the incoming aminoacyl-tRNA bind?

<p>A-site (C)</p> Signup and view all the answers

The enzyme responsible for catalyzing peptide bond formation is located in the ribosome's

<p>P-site (D)</p> Signup and view all the answers

The tRNA that carries the growing polypeptide chain is located in which site?

<p>P-site (A)</p> Signup and view all the answers

Termination of translation occurs when a stop codon enters the:

<p>A-site (C)</p> Signup and view all the answers

The mechanism by which proteins are transported to their correct locations is called:

<p>Protein sorting (B)</p> Signup and view all the answers

Proteins synthesized on ribosomes bound to the ER are destined for:

<p>Secretion or cell membranes (C)</p> Signup and view all the answers

The signal recognition particle (SRP) is involved in targeting proteins to the:

<p>Endoplasmic reticulum (C)</p> Signup and view all the answers

Chemical modifications to a protein after translation are called:

<p>Post-translational modifications (A)</p> Signup and view all the answers

Which of the following is a post-translational modification?

<p>Glycosylation (D)</p> Signup and view all the answers

The addition of a carbohydrate group to a protein is called:

<p>Glycosylation (B)</p> Signup and view all the answers

Proteolytic cleavage is a post-translational modification that:

<p>Involves the activation of a protein by cutting it (A)</p> Signup and view all the answers

A mutation that changes a single nucleotide and results in a different amino acid is a:

<p>Missense mutation (C)</p> Signup and view all the answers

Sickle cell anemia is caused by a mutation in the gene for:

<p>Beta-globin (D)</p> Signup and view all the answers

The basic building blocks of proteins are:

<p>Amino acids (A)</p> Signup and view all the answers

Which part of an amino acid distinguishes it from other amino acids?

<p>R-group (side chain) (A)</p> Signup and view all the answers

A peptide bond is formed between the:

<p>Carboxyl group of one amino acid and the amino group of another (D)</p> Signup and view all the answers

An amino acid with a nonpolar side chain is:

<p>Valine (D)</p> Signup and view all the answers

An amino acid with a negatively charged side chain at physiological pH is:

<p>Aspartic acid (C)</p> Signup and view all the answers

Which amino acid contains a thiol (-SH) group?

<p>Cysteine (B)</p> Signup and view all the answers

Which amino acid is classified as an imino acid?

<p>Proline (C)</p> Signup and view all the answers

In a protein, the amino acids are linked together by:

<p>Peptide bonds (B)</p> Signup and view all the answers

A protein is a polymer of:

<p>Amino acids (A)</p> Signup and view all the answers

Which of the following is NOT a function of proteins? ______

<p>Energy storage</p> Signup and view all the answers

The primary structure of a protein is its:

<p>Amino acid sequence (B)</p> Signup and view all the answers

Which type of bond stabilizes the primary structure of a protein?

<p>Peptide bond (D)</p> Signup and view all the answers

Secondary protein structures are stabilized by:

<p>Hydrogen bonds (A)</p> Signup and view all the answers

Which of the following is a type of secondary protein structure?

<p>Alpha-helix (C)</p> Signup and view all the answers

Beta-pleated sheets are characterized by:

<p>Zigzag arrangement of polypeptide chains (B)</p> Signup and view all the answers

A beta-turn is a type of secondary structure that:

<p>Reverses the direction of a polypeptide chain (C)</p> Signup and view all the answers

The amino acid commonly found in beta-turns is:

<p>Proline (C)</p> Signup and view all the answers

The overall three-dimensional shape of a protein is its:

<p>Tertiary structure (A)</p> Signup and view all the answers

A protein domain is:

<p>A distinct structural unit of a polypeptide (B)</p> Signup and view all the answers

Which type of interaction is NOT involved in stabilizing tertiary structure?

<p>Peptide bonds (B)</p> Signup and view all the answers

Hydrophobic interactions in proteins cause nonpolar amino acids to cluster:

<p>In the interior of the protein (D)</p> Signup and view all the answers

The quaternary structure of a protein describes:

<p>The arrangement of subunits (C)</p> Signup and view all the answers

Hemoglobin is an example of a protein with:

<p>Quaternary structure (A)</p> Signup and view all the answers

The process by which a polypeptide chain acquires its functional 3D shape is called:

<p>Protein folding (A)</p> Signup and view all the answers

Proteins that assist in the folding of other proteins are called:

<p>Chaperones (C)</p> Signup and view all the answers

Misfolded proteins can be associated with:

<p>Protein aggregation and disease (D)</p> Signup and view all the answers

Prion diseases are caused by:

<p>Misfolded proteins (C)</p> Signup and view all the answers

Denaturation of a protein involves the disruption of:

<p>Secondary and tertiary structures (C)</p> Signup and view all the answers

Which of the following is a denaturing agent?

<p>Heat (D)</p> Signup and view all the answers

Proteins that are elongated and often have a structural role are classified as:

<p>Fibrous proteins (A)</p> Signup and view all the answers

Keratin and collagen are examples of:

<p>Fibrous proteins (B)</p> Signup and view all the answers

Most enzymes are classified as:

<p>Globular proteins (B)</p> Signup and view all the answers

Proteins that catalyze biological reactions are called:

<p>Enzymes (A)</p> Signup and view all the answers

Which of the following is NOT a function of proteins? ______

<p>Energy storage</p> Signup and view all the answers

Hemoglobin is classified as a:

<p>Transport protein (C)</p> Signup and view all the answers

The process of synthesizing RNA from a DNA template is called:

<p>Transcription (B)</p> Signup and view all the answers

In transcription, the RNA molecule is synthesized in the:

<p>5' to 3' direction (D)</p> Signup and view all the answers

The DNA strand that has the same sequence as the RNA molecule (except for T instead of U) is the:

<p>Coding strand (A)</p> Signup and view all the answers

In eukaryotes, transcription occurs in the:

<p>Nucleus (A)</p> Signup and view all the answers

Which of the following is a post-transcriptional modification in eukaryotes?

<p>RNA splicing (B)</p> Signup and view all the answers

The non-coding sequences within a gene are called:

<p>Introns (A)</p> Signup and view all the answers

The addition of a 5' cap and 3' poly-A tail to mRNA in eukaryotes helps with:

<p>mRNA stability and translation (D)</p> Signup and view all the answers

The process of synthesizing a polypeptide chain from mRNA is called:

<p>Translation (D)</p> Signup and view all the answers

Translation occurs at the:

<p>Ribosome (C)</p> Signup and view all the answers

Each codon on mRNA specifies a particular:

<p>Amino acid (C)</p> Signup and view all the answers

A codon consists of how many nucleotides? _____

<p>3</p> Signup and view all the answers

The start codon AUG codes for the amino acid:

<p>Methionine (C)</p> Signup and view all the answers

Which site on the ribosome does the incoming aminoacyl-tRNA bind? _____

<p>A-site</p> Signup and view all the answers

The enzyme responsible for catalyzing peptide bond formation is located in the ribosome's _____

<p>P-site</p> Signup and view all the answers

The tRNA that carries the growing polypeptide chain is located in which site? _____

<p>P-site</p> Signup and view all the answers

Termination of translation occurs when a stop codon enters the: _____

<p>A-site</p> Signup and view all the answers

The mechanism by which proteins are transported to their correct locations is called:

<p>Protein sorting (D)</p> Signup and view all the answers

Proteins synthesized on ribosomes bound to the ER are destined for:

<p>Secretion or cell membranes (A)</p> Signup and view all the answers

The signal recognition particle (SRP) is involved in targeting proteins to the:

<p>Endoplasmic reticulum (D)</p> Signup and view all the answers

Chemical modifications to a protein after translation are called:

<p>Post-translational modifications (D)</p> Signup and view all the answers

Which of the following is a post-translational modification?

<p>Glycosylation (D)</p> Signup and view all the answers

The addition of a carbohydrate group to a protein is called:

<p>Glycosylation (C)</p> Signup and view all the answers

Proteolytic cleavage is a post-translational modification that:

<p>Involves the activation of a protein by cutting it (A)</p> Signup and view all the answers

A mutation that changes a single nucleotide and results in a different amino acid is a:

<p>Missense mutation (D)</p> Signup and view all the answers

Sickle cell anemia is caused by a mutation in the gene for:

<p>Beta-globin (C)</p> Signup and view all the answers

Flashcards

Amino acids

The basic building blocks of proteins.

R-group (side chain)

The variable part of an amino acid that distinguishes it from others.

Peptide bond

A covalent bond formed between the carboxyl group of one amino acid and the amino group of another, releasing a molecule of water.

Protein

A polymer of amino acids linked together by peptide bonds.

Signup and view all the flashcards

Primary structure of a protein

The sequence of amino acids in a polypeptide chain.

Signup and view all the flashcards

Secondary protein structure

Local folding patterns of a protein stabilized by hydrogen bonds between the peptide backbone, forming structures such as alpha-helices and beta-pleated sheets.

Signup and view all the flashcards

Tertiary structure of a protein

The overall three-dimensional shape of a protein molecule.

Signup and view all the flashcards

Protein domain

A distinct structural unit of a polypeptide.

Signup and view all the flashcards

Protein folding

The process in which a polypeptide chain acquires its functional 3D shape.

Signup and view all the flashcards

Chaperones

Proteins that assist in the correct folding of other proteins.

Signup and view all the flashcards

Fibrous proteins

Proteins that are elongated and often have a structural role.

Signup and view all the flashcards

Enzymes

Proteins that catalyze biological reactions.

Signup and view all the flashcards

Transcription

The process of synthesizing RNA from a DNA template.

Signup and view all the flashcards

Introns

Non-coding sequences within a gene that are removed during RNA splicing.

Signup and view all the flashcards

Translation

The process of synthesizing a polypeptide chain from mRNA.

Signup and view all the flashcards

Amino acid

Each codon on messenger RNA specifies a particular one.

Signup and view all the flashcards

Codon

A sequence of three nucleotides that codes for an amino acid.

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A-Site

The site on the ribosome where the incoming aminoacyl-tRNA binds.

Signup and view all the flashcards

Post-translational modifications

Chemical modifications to a protein after translation.

Signup and view all the flashcards

Missense mutation

A mutation that changes a single nucleotide and results in a different amino acid.

Signup and view all the flashcards

Cysteine

An amino acid containing a thiol (-SH) group.

Signup and view all the flashcards

Proline

An amino acid classified as an imino acid, due to its cyclic structure.

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Tertiary structure

A protein's overall three-dimensional shape, resulting from interactions between side chains.

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Beta-turn

A type of secondary structure that reverses the direction of a polypeptide chain.

Signup and view all the flashcards

Quaternary structure

Describes the arrangement of subunits in a protein with multiple polypeptide chains.

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Globular and Fibrous

Proteins can be classified into these two primary groups.

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Protein Sorting

Process by which proteins are transported to their appropriate locations.

Signup and view all the flashcards

Glycosylation

Adding a carbohydrate group to a protein

Signup and view all the flashcards

Proteolytic cleavage

A post-translational modifications that involves activating a protein by cleaving it.

Signup and view all the flashcards

Study Notes

Amino Acid and Protein Structure

  • Amino acids are the basic building blocks of proteins
  • The R-group (side chain) distinguishes one amino acid from another
  • A peptide bond forms between the carboxyl group of one amino acid and the amino group of another
  • Valine is an example of an amino acid with a nonpolar side chain
  • Aspartic acid is an example of an amino acid with a negatively charged side chain at physiological pH
  • Cysteine contains a thiol (-SH) group
  • Proline is classified as an imino acid
  • Amino acids in a protein are linked together by peptide bonds
  • A protein is a polymer of amino acids
  • Energy storage is not a function of proteins

Protein Structure and Properties

  • The primary structure of a protein refers to its amino acid sequence
  • The primary structure of a protein is stabilized by peptide bonds
  • Secondary protein structures are stabilized by hydrogen bonds
  • An alpha-helix is a type of secondary protein structure
  • Beta-pleated sheets have a zigzag arrangement of polypeptide chains
  • A beta-turn is a type of secondary structure that reverses the direction of a polypeptide chain
  • The amino acid commonly found in beta-turns is Proline
  • The overall three-dimensional shape of a protein is its tertiary structure
  • A protein domain is a distinct structural unit of a polypeptide
  • Peptide bonds are not involved in stabilizing tertiary structure
  • Hydrophobic interactions cause nonpolar amino acids to cluster in the interior of a protein
  • The quaternary structure of a protein describes the arrangement of subunits
  • Hemoglobin is an example of a protein with quaternary structure

Protein Folding and Modification

  • Proteinfolding is the process by which a polypeptide chain acquires its functional 3D shape
  • Chaperones are proteins that assist in the folding of other proteins
  • Misfolded proteins can be associated with protein aggregation and disease
  • Prion diseases are caused by misfolded proteins
  • Denaturation of a protein involves the disruption of secondary and tertiary structures
  • Heat is a denaturing agent

Protein Classification and Function

  • Proteins that are elongated and often have a structural role are classified as fibrous proteins
  • Keratin and collagen are examples of fibrous proteins
  • Most enzymes are classified as globular proteins
  • Enzymes catalyze biological reactions
  • Energy storage is not typically a function of proteins
  • Hemoglobin is classified as a transport protein

Protein Synthesis: Transcription

  • Transcription synthesizes RNA from a DNA template
  • In transcription, the RNA molecule is synthesized in the 5' to 3' direction
  • The coding strand of DNA has the same sequence as the RNA molecule (except T instead of U)
  • In eukaryotes, transcription occurs in the nucleus
  • RNA splicing is a post-transcriptional modification in eukaryotes
  • Introns are the non-coding sequences within a gene
  • The addition of a 5' cap and 3' poly-A tail to mRNA in eukaryotes helps with mRNA stability and translation

Protein Synthesis: Translation

  • Translation is the process of synthesizing a polypeptide chain from mRNA
  • Translation occurs at the ribosome
  • Each codon on mRNA specifies a particular amino acid
  • A codon consists of 3 nucleotides
  • The start codon AUG codes for methionine
  • The incoming aminoacyl-tRNA binds to the A-site on the ribosome
  • The enzyme responsible for catalyzing peptide bond formation is located in the ribosome's P-site
  • The tRNA carrying the growing polypeptide chain is located in the P-site
  • Termination of translation happens when a stop codon enters the A-site

Protein Targeting and Post-Translational Modifications

  • Protein sorting is the mechanism by which proteins are transported to their correct locations
  • Proteins synthesized on ribosomes bound to the ER are destined for secretion or cell membranes
  • The signal recognition particle (SRP) targets proteins to the endoplasmic reticulum
  • Post-translational modifications are chemical modifications to a protein after translation
  • Glycosylation is a post-translational modification
  • Glycosylation refers to the addition of a carbohydrate group to a protein
  • Proteolytic cleavage is a post-translational modification that involves the activation of a protein by cutting it

Protein Mutations

  • A missense mutation is a mutation that changes a single nucleotide and results in a different amino acid
  • Sickle cell anemia is caused by a mutation in the gene for beta-globin

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