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Questions and Answers
What is a characteristic of amino acids at physiologic pH?
What is a characteristic of amino acids at physiologic pH?
- The carboxyl group is dissociated and the amino group is protonated (correct)
- The carboxyl group is protonated
- The carboxyl group is neutral and the amino group is neutral
- The amino group is dissociated
Which of the following amino acids are not synthesized by the human body?
Which of the following amino acids are not synthesized by the human body?
- Gly, Ala, Ser, Pro
- Cys, Tyr, Asn, Gln, Asp, Glu
- Hydroxyproline, hydroxylysine, γ-carboxyglutamate
- Val, Leu, Ile, Phe, Met, Thr, Lys, Arg, Trp (correct)
What is the functional group that is bonded to the α-carbon atom in an amino acid?
What is the functional group that is bonded to the α-carbon atom in an amino acid?
- R-group (side chain) (correct)
- Hydroxyl group
- Carboxyl group
- Amino group
What is the result of peptide bond formation in proteins?
What is the result of peptide bond formation in proteins?
Which of the following amino acids have a secondary amino group?
Which of the following amino acids have a secondary amino group?
What is the term for amino acids that require nutritionally essential amino acids for their synthesis?
What is the term for amino acids that require nutritionally essential amino acids for their synthesis?
What is the primary function of the selenocysteine insertion element in the untranslated region of the mRNA?
What is the primary function of the selenocysteine insertion element in the untranslated region of the mRNA?
What is the term used to describe the 21st protein L-α-amino acid?
What is the term used to describe the 21st protein L-α-amino acid?
What is the result of the post-translational modification of peptidyl proline and peptidyl lysine?
What is the result of the post-translational modification of peptidyl proline and peptidyl lysine?
What is the characteristic of nutritionally nonessential amino acids?
What is the characteristic of nutritionally nonessential amino acids?
How many L-α-amino acids are encoded by nucleotide triplets called codons?
How many L-α-amino acids are encoded by nucleotide triplets called codons?
What is the role of tRNASec in the incorporation of selenocysteine into proteins?
What is the role of tRNASec in the incorporation of selenocysteine into proteins?
What is the unique feature of proline's side chain and α-amino N?
What is the unique feature of proline's side chain and α-amino N?
What type of amino acid is proline frequently referred to as?
What type of amino acid is proline frequently referred to as?
What is the consequence of the substitution of polar glutamate by nonpolar valine in the β subunit of hemoglobin?
What is the consequence of the substitution of polar glutamate by nonpolar valine in the β subunit of hemoglobin?
What is the primary function of a buffer in biological systems?
What is the primary function of a buffer in biological systems?
What is the purpose of amino acid titration?
What is the purpose of amino acid titration?
What is the indicator of the stoichiometric equivalence point in amino acid titration?
What is the indicator of the stoichiometric equivalence point in amino acid titration?
Why is proline often found in collagen, a fibrous protein?
Why is proline often found in collagen, a fibrous protein?
What is the composition of a typical buffer solution?
What is the composition of a typical buffer solution?
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Study Notes
Amino Acids
- Nutritionally essential amino acids are those that cannot be synthesized by the body and must be obtained through the diet.
- Examples of essential amino acids: Val, Leu, Ile, Phe, Met, Thr, Lys, Arg, His, Trp
- Semiessential amino acids require nutritionally essential amino acids for their synthesis.
Non-Essential Amino Acids
- Non-essential amino acids can be synthesized by the body and are not required in the diet.
- Examples of non-essential amino acids: Gly, Ala, Ser, Pro, Cys, Tyr, Asn, Gln, Asp, Glu
Structure of Amino Acids
- Amino acids have a carboxyl group, a primary amino group, and a distinctive side chain (R-group) bonded to the α-carbon atom.
- At physiologic pH, the carboxyl group is dissociated, forming the negatively charged carboxylate ion (–COO–), and the amino group is protonated (–NH3+).
- In proteins, the carboxyl and amino groups are combined through peptide linkage and are not available for chemical reaction except for hydrogen bond formation.
The Genetic Code
- The genetic code specifies 20 L-α-amino acids encoded by nucleotide triplets called codons.
- Some proteins contain additional amino acids that arise by post-translational modification of an amino acid already present in a peptide.
Selenocysteine
- Selenocysteine is the 21st protein L-α-amino acid, found in proteins from every domain of life.
- Selenocysteine is not the product of a post-translational modification, but is inserted directly into a growing polypeptide during translation.
- Selenocysteine is specified by a large and complex genetic element that utilizes the UGA anticodon that normally signals STOP.
Proline
- Proline differs from other amino acids in that its side chain and α-amino N form a rigid, five-membered ring structure.
- Proline has a secondary (rather than a primary) amino group and is often referred to as an imino acid.
- The unique geometry of proline contributes to the formation of the fibrous structure of collagen and often interrupts the α-helices found in globular proteins.
Sickle Cell Disease
- Sickle cell disease is an inherited blood disorder marked by defective hemoglobin.
- It inhibits the ability of hemoglobin in red blood cells to carry oxygen.
- The disease results from the substitution of polar glutamate by nonpolar valine at the sixth position in the β subunit of hemoglobin.
Buffers
- A buffer is a solution that resists changes in pH when small amounts of acid or base are added to it.
- Buffers are typically composed of a weak acid and its conjugate base (or a weak base and its conjugate acid) in roughly equal amounts.
- Buffers are crucial in various biological, chemical, and laboratory applications where maintaining a stable pH is essential.
Titration
- Amino acid titration refers to the process of determining the concentration of amino acids in a solution by gradually adding a titrant solution of known concentration until a specific endpoint is reached.
- During the titration, the pH of the amino acid solution is monitored, and changes in pH occur as the titrant is added.
- At the endpoint, the pH reaches a certain value, indicating that the stoichiometric equivalence point has been reached.
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