Amino Acids and Alpha-Helix Structure Quiz

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Questions and Answers

What type of software is commonly used to predict protein structures by simulating folding patterns and energy minimization?

  • X-ray crystallography software
  • Structure prediction algorithms (correct)
  • Cryo-electron microscopy software
  • Nuclear magnetic resonance software

What technique is commonly used to determine protein structures by analyzing the diffraction patterns of X-rays?

  • X-ray crystallography (correct)
  • Structure prediction algorithms
  • Nuclear magnetic resonance
  • Cryo-electron microscopy

Which method relies on the alignment of magnetic fields to study the structure of proteins at the atomic level?

  • Cryo-electron microscopy
  • Bioinformatics
  • Structure prediction algorithms
  • Nuclear magnetic resonance (correct)

What technique involves freezing samples to very low temperatures to capture detailed protein structures without the need for crystallization?

<p>Cryo-electron microscopy (B)</p> Signup and view all the answers

Which approach uses computational methods to predict protein structures based on amino acid sequences and known protein structures?

<p>Structure prediction algorithms (A)</p> Signup and view all the answers

Which field of study involves the use of computer algorithms and biological data to analyze and interpret protein sequences and structures?

<p>Bioinformatics (D)</p> Signup and view all the answers

What is the name of the artificial intelligence network developed by Google AI offshoot DeepMind that made a significant leap in solving protein structure prediction?

<p>AlphaFold (B)</p> Signup and view all the answers

Which annual challenge did AlphaFold outperform around 100 other teams in for protein structure prediction?

<p>CASP Challenge (C)</p> Signup and view all the answers

Who co-founded CASP in 1994 with the aim of improving computational methods for accurately predicting protein structures?

<p>John Moult (C)</p> Signup and view all the answers

Which technique is NOT mentioned in the text as a method for protein structure determination?

<p>Mass Spectrometry (D)</p> Signup and view all the answers

Which area of study focuses on the computational analysis of biological data for structure prediction?

<p>Bioinformatics (A)</p> Signup and view all the answers

What is the term used to describe the third phase of proteins according to A.Wada and M Ohgushi in 1983?

<p>Molten globule (C)</p> Signup and view all the answers

Which technique provides information about proteins lacking a well-structured three-dimensional fold, according to the Nature Reviews Molecular Cell Biology article by Dyson & Wright?

<p>Nuclear magnetic resonance (B)</p> Signup and view all the answers

Under what conditions was the molten globule first observed in cytochrome c?

<p>Low pH and high salt concentration (A)</p> Signup and view all the answers

Which technique is commonly used in bioinformatics to predict protein structures?

<p>Structure prediction algorithms (B)</p> Signup and view all the answers

Which type of proteins lack a well-structured three-dimensional fold according to Dyson & Wright's article?

<p>Intrinsically unstructured proteins (C)</p> Signup and view all the answers

What technique involves the use of X-rays to determine the structure of protein crystals?

<p>X-ray diffraction (A)</p> Signup and view all the answers

Which method utilizes multi-dimensional analysis of proteins in solutions to predict their structure?

<p>Structure prediction algorithms (D)</p> Signup and view all the answers

In bioinformatics, what is the term for making structure predictions based on known protein structures?

<p>De novo predictions (D)</p> Signup and view all the answers

Which of the following techniques involves complex computational processing algorithms in addition to imaging?

<p>Cryo-electron microscopy (B)</p> Signup and view all the answers

What is the primary method used for determining the structures of proteins in membranes?

<p>Cryo-electron microscopy (A)</p> Signup and view all the answers

What structural feature of proline disrupts the alpha helix?

<p>Restricted rotation due to its cyclic structure (C)</p> Signup and view all the answers

What is the function of glycine in beta-reverse turns?

<p>Assists in changing the direction of the polypeptide chain (C)</p> Signup and view all the answers

Which factor contributes to disrupting an alpha helix by causing steric crowding?

<p>Proximity of bulky side chains like Val, Ile, Thr (A)</p> Signup and view all the answers

What is the primary reason for proline acting as an 'alpha helix breaker'?

<p>Restricted rotation due to its cyclic structure (A)</p> Signup and view all the answers

Which secondary structure involves polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta-pleated sheet (B)</p> Signup and view all the answers

What is the main cause of protein denaturation due to pH changes?

<p>Alteration of side chain electrostatics (C)</p> Signup and view all the answers

Which compound is used to disrupt disulfide bonds in proteins?

<p>Mercaptoethanol (D)</p> Signup and view all the answers

What is a common effect of heat on protein denaturation?

<p>Exposing buried nonpolar segments (B)</p> Signup and view all the answers

Which type of proteins are known to have hydrophobic residues inside their structures?

<p>Globular proteins (A)</p> Signup and view all the answers

What is the role of molecular chaperones in protein folding?

<p>Ensure proper protein folding (A)</p> Signup and view all the answers

How does cryo-electron microscopy contribute to studying protein structures?

<p>By freezing protein samples in ice (A)</p> Signup and view all the answers

What is a key feature of nuclear magnetic resonance (NMR) in determining protein structures?

<p>Measuring interactions between atomic nuclei (A)</p> Signup and view all the answers

How do structure prediction algorithms contribute to bioinformatics?

<p>By predicting secondary structure elements (A)</p> Signup and view all the answers

What is a common application of bioinformatics in protein research?

<p>Predicting protein structures from sequences (C)</p> Signup and view all the answers

What is a limitation of X-ray crystallography compared to cryo-electron microscopy?

<p>Inability to study protein dynamics (A)</p> Signup and view all the answers

What disrupts an alpha helix by creating a bend due to restricted rotation and lack of hydrogen bonding?

<p>Proline (B)</p> Signup and view all the answers

In beta-pleated sheets, which amino acid is commonly found in reverse turns due to spatial reasons?

<p>Proline (D)</p> Signup and view all the answers

Which of the following structures involve polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta-pleated sheet (A)</p> Signup and view all the answers

What disrupts the alpha helix by causing steric crowding due to the proximity of bulky side chains?

<p>Valine (C)</p> Signup and view all the answers

In beta-reverse turns, which amino acid is most commonly encountered for spatial reasons?

<p>Glycine (D)</p> Signup and view all the answers

Which protein structure is characterized by polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta pleated sheet (A)</p> Signup and view all the answers

What structural feature of proline disrupts the formation of an alpha helix?

<p>Planar structure (B)</p> Signup and view all the answers

Which of the following emphasizes interactions of amino acid side chains in non-neighboring regions of the polypeptide chain in protein folding?

<p>Tertiary structure (A)</p> Signup and view all the answers

Which type of structure is involved in the folding of proteins on their own, converging but not yet evolutionarily stabilized?

<p>Super-secondary structure (C)</p> Signup and view all the answers

In protein structures, which feature is associated with multiple globular domains often approximated as spheres and water-soluble?

<p>Tertiary structure (C)</p> Signup and view all the answers

What is the primary distinguishing feature of an alpha helix structure?

<p>Formation of hydrogen bonds between backbone amide groups (B)</p> Signup and view all the answers

Which amino acid is commonly involved in beta-reverse turns in proteins?

<p>Glycine (A)</p> Signup and view all the answers

What is a key characteristic of super-secondary structures in proteins?

<p>Involvement of multiple secondary structure elements (B)</p> Signup and view all the answers

Which factor contributes to stabilizing the beta pleated sheet structure in proteins?

<p>Formation of hydrogen bonds between adjacent strands (A)</p> Signup and view all the answers

What effect does the hydrophobic effect have on tertiary protein structure?

<p>Stabilizing non-polar interactions (C)</p> Signup and view all the answers

What type of proteins are known to be mechanically strong and insoluble in water and dilute salt solutions?

<p>Fibrous proteins (D)</p> Signup and view all the answers

Which type of structure involves polypeptide chains organized approximately parallel along a single axis?

<p>Super-secondary structure (D)</p> Signup and view all the answers

What common structural feature contributes to disrupting an alpha helix?

<p>Steric crowding (B)</p> Signup and view all the answers

What type of protein folding involves interactions with water and tertiary (3°) structure forces?

<p>Proper protein folding (C)</p> Signup and view all the answers

Which secondary structure involves polypeptide chains lying adjacent in a sheet-like structure?

<p>Beta pleated sheet (D)</p> Signup and view all the answers

What type of local conformations in proteins are maintained by extensive hydrogen bonding involving the peptide bond components?

<p>Super-secondary structures (A)</p> Signup and view all the answers

Which structural feature of proteins consists of a regular pattern of hydrogen bonds between amide N-H and C=O groups of amino acids near each other in the primary sequence?

<p>Alpha helices (B)</p> Signup and view all the answers

What type of structure forms when the C=O of one amino acid is hydrogen bonded to the N-H of an amino acid that is four residues down the chain?

<p>Alpha helices (A)</p> Signup and view all the answers

In protein structures, which feature involves polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta pleated sheets (B)</p> Signup and view all the answers

What is the role of glycine in protein structures involving beta-reverse turns?

<p>Facilitating conformational changes (D)</p> Signup and view all the answers

What structural feature of a protein may be disrupted due to steric crowding, leading to the distortion of its backbone structure?

<p>Alpha helix (D)</p> Signup and view all the answers

Which type of protein secondary structure involves polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta pleated sheet (C)</p> Signup and view all the answers

In the context of protein structures, what is the role of glycine in beta-reverse turns?

<p>Facilitation of turn formation (C)</p> Signup and view all the answers

Which protein feature is most likely to be disrupted by steric hindrance, leading to alterations in its quaternary structure?

<p>Beta-alpha-beta units (D)</p> Signup and view all the answers

When analyzing protein structures, which level of protein organization includes the arrangement of beta strands connected by loops or turns?

<p>Secondary structure (B)</p> Signup and view all the answers

What is the term used to describe a protein phase with a native-like secondary structure but without a tightly packed protein interior?

<p>Molten globule (B)</p> Signup and view all the answers

Which structural element in proteins involves polypeptide chains lying adjacent to each other in a sheet-like structure?

<p>Beta pleated sheet (A)</p> Signup and view all the answers

What amino acid is commonly found in reverse turns due to spatial reasons?

<p>Glycine (D)</p> Signup and view all the answers

What disrupts an alpha helix by causing steric crowding due to restricted rotation and lack of hydrogen bonding?

<p>Proline (D)</p> Signup and view all the answers

Which phase of proteins conserves a native-like secondary structure content but lacks a tightly packed protein interior under specific conditions?

<p>Molten globule (D)</p> Signup and view all the answers

What term describes the tertiary structure of proteins that lack a well-structured three-dimensional fold?

<p>Unstructured state (C)</p> Signup and view all the answers

Which amino acid disrupts an alpha helix by creating a bend due to steric crowding caused by bulky side chains?

<p>Proline (A)</p> Signup and view all the answers

What causes disruption of an alpha helix due to steric crowding from bulky side chains?

<p>Proline (D)</p> Signup and view all the answers

What is the primary reason for proline acting as an 'alpha helix breaker'?

<p>The presence of imino acid (B)</p> Signup and view all the answers

What structural feature of proline disrupts the alpha helix?

<p>The presence of imino acid (D)</p> Signup and view all the answers

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