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Questions and Answers
What does LRT stand for?
What does LRT stand for?
Lower respiratory tract
Which of the following is the most common cause of bronchiolitis in infants?
Which of the following is the most common cause of bronchiolitis in infants?
What is the incubation period of bronchiolitis?
What is the incubation period of bronchiolitis?
What are two common signs of bronchiolitis?
What are two common signs of bronchiolitis?
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Bronchodilators are often used to treat bronchiolitis.
Bronchodilators are often used to treat bronchiolitis.
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Antibiotics are used to prevent secondary bacterial infections in bronchiolitis.
Antibiotics are used to prevent secondary bacterial infections in bronchiolitis.
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What condition is recommended to hospitalize children with?
What condition is recommended to hospitalize children with?
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What is the abbreviation for Community Acquired Pneumonia?
What is the abbreviation for Community Acquired Pneumonia?
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Viral pneumonia is a serious condition for elderly patients.
Viral pneumonia is a serious condition for elderly patients.
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What percentage of CAP in adults and children is caused by viruses?
What percentage of CAP in adults and children is caused by viruses?
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Which of the following is NOT a risk factor for viral pneumonia?
Which of the following is NOT a risk factor for viral pneumonia?
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What type of onset does viral pneumonia tend to have compared to bacterial pneumonia?
What type of onset does viral pneumonia tend to have compared to bacterial pneumonia?
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Symptoms of viral pneumonia usually begin several days after upper respiratory symptoms.
Symptoms of viral pneumonia usually begin several days after upper respiratory symptoms.
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Secondary bacterial respiratory infections are more common in high-risk patients with viral pneumonia.
Secondary bacterial respiratory infections are more common in high-risk patients with viral pneumonia.
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Which of the following is NOT a common organism that causes viral pneumonia?
Which of the following is NOT a common organism that causes viral pneumonia?
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What is the main route of infection for viral pneumonia?
What is the main route of infection for viral pneumonia?
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To what family does the influenza virus belong?
To what family does the influenza virus belong?
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What type of viruses are influenza viruses?
What type of viruses are influenza viruses?
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What type of genome do influenza viruses have?
What type of genome do influenza viruses have?
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What are the three serotypes of influenza?
What are the three serotypes of influenza?
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What are the two surface glycoproteins found on influenza viruses?
What are the two surface glycoproteins found on influenza viruses?
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Antigenic drift is a major antigenic change that can cause pandemics.
Antigenic drift is a major antigenic change that can cause pandemics.
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Antigenic shift involves a major antigenic change in hemagglutinin or neuraminidase resulting in pandemics.
Antigenic shift involves a major antigenic change in hemagglutinin or neuraminidase resulting in pandemics.
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Antigenic drift can occur in influenza A serotypes but not in B serotypes.
Antigenic drift can occur in influenza A serotypes but not in B serotypes.
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Antigenic drift can cause epidemics.
Antigenic drift can cause epidemics.
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What is the usual incubation period for influenza?
What is the usual incubation period for influenza?
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Which of the following is NOT a complication of influenza?
Which of the following is NOT a complication of influenza?
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The Guillain-Barré syndrome is a complication of influenza.
The Guillain-Barré syndrome is a complication of influenza.
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Which of the following is a common laboratory test used to diagnose influenza?
Which of the following is a common laboratory test used to diagnose influenza?
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Which of the following antiviral medications is used to treat influenza?
Which of the following antiviral medications is used to treat influenza?
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There is currently no vaccine available to prevent influenza.
There is currently no vaccine available to prevent influenza.
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Live attenuated vaccines are more effective than inactivated vaccines at inducing the formation of circulating antibodies.
Live attenuated vaccines are more effective than inactivated vaccines at inducing the formation of circulating antibodies.
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Which of the following is NOT a type of vaccine used for prophylaxis?
Which of the following is NOT a type of vaccine used for prophylaxis?
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Killed vaccines induce the formation of circulating antibodies and provide local immunity.
Killed vaccines induce the formation of circulating antibodies and provide local immunity.
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Live attenuated vaccines stimulate the production of local IgA antibodies.
Live attenuated vaccines stimulate the production of local IgA antibodies.
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Which of the following coronaviruses caused the 2003 SARS outbreak?
Which of the following coronaviruses caused the 2003 SARS outbreak?
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What type of virus is the coronavirus?
What type of virus is the coronavirus?
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What is the incubation period for coronaviruses?
What is the incubation period for coronaviruses?
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MERS-CoV is a type of Coronavirus.
MERS-CoV is a type of Coronavirus.
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The 2019-outbreak coronavirus is from bats.
The 2019-outbreak coronavirus is from bats.
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The COVID-19 virus, SARS-CoV-2, has a high mortality rate.
The COVID-19 virus, SARS-CoV-2, has a high mortality rate.
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The COVID-19 virus is a more contagious virus than other coronaviruses.
The COVID-19 virus is a more contagious virus than other coronaviruses.
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The COVID-19 virus is primarily spread through respiratory droplets.
The COVID-19 virus is primarily spread through respiratory droplets.
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There is no specific antiviral treatment for COVID-19.
There is no specific antiviral treatment for COVID-19.
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The incubation period for COVID-19 is 2 to 14 days.
The incubation period for COVID-19 is 2 to 14 days.
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Most people infected by COVID-19 are asymptomatic.
Most people infected by COVID-19 are asymptomatic.
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Diarrhea is a common sign of COVID-19.
Diarrhea is a common sign of COVID-19.
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Which of the following is a diagnostic test for COVID-19?
Which of the following is a diagnostic test for COVID-19?
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Corticosteroids are effective in treating COVID-19 pneumonia.
Corticosteroids are effective in treating COVID-19 pneumonia.
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What is the name of the protein that the COVID-19 virus binds to on the surface of human cells?
What is the name of the protein that the COVID-19 virus binds to on the surface of human cells?
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Which of the following is an example of an opportunistic fungal infection?
Which of the following is an example of an opportunistic fungal infection?
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Fungal infections are frequently seen in intensive care units (ICUs).
Fungal infections are frequently seen in intensive care units (ICUs).
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What is the cause of Valley Fever?
What is the cause of Valley Fever?
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Valley Fever is endemic to the southwestern U.S.
Valley Fever is endemic to the southwestern U.S.
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North American Blastomycosis is caused by Blastomyces dermatitidis
North American Blastomycosis is caused by Blastomyces dermatitidis
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Cryptococcosis is most frequently seen in individuals who are gardening.
Cryptococcosis is most frequently seen in individuals who are gardening.
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Pneumocystis jirovecii pneumonia is a common opportunistic infection in patients with AIDS.
Pneumocystis jirovecii pneumonia is a common opportunistic infection in patients with AIDS.
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There is a readily available culture for Pneumocystis jirovecii pneumonia.
There is a readily available culture for Pneumocystis jirovecii pneumonia.
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Which of the following is NOT a typical method used to diagnose a fungal infection?
Which of the following is NOT a typical method used to diagnose a fungal infection?
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Study Notes
Viral & Fungal Pneumonia
- Viral pneumonia and fungal pneumonia are respiratory infections.
Viral Infection of Lower Respiratory Tract (LRT)
- Pneumonia: An infection of the lungs.
- Bronchiolitis: An infection of the small bronchioles in the lungs.
Bronchiolitis
- Acute viral infection affecting small bronchioles
- Primarily in infants and young children (under 2 years old)
- Only humans can transmit the infection
- Etiology: Respiratory Syncytial Virus (RSV)
- Incubation period: 4-8 days
- Symptoms: cough, wheezing, shortness of breath; difficulty feeding in some children.
- Signs: crackles or wheezes heard on lung auscultation
- Chest X-ray shows typical bilateral perihilar fullness of bronchioles
- Treatment: Bronchodilators, Antibiotics (to prevent secondary bacterial infections), hospitalization may be necessary for children with underlying heart or lung conditions.
Viral Pneumonia
- Viruses are a significant cause of community acquired pneumonia (CAP).
- It is a serious illness, especially in older and immunocompromised individuals.
- Viruses cause up to 35% of CAP in adults and children.
- Risk factors: Elderly, chronic chest diseases (e.g., Asthma), immunocompromised patients
- Symptoms tend to be of gradual onset and are less severe than bacterial pneumonia.
- Symptoms of viral pneumonia begin a few days after upper respiratory symptoms, such as a sore throat.
- Secondary bacterial infections are common among high-risk individuals.
- Common viral causes: Influenza virus, RSV, Coronaviruses, Para-influenza virus, Adenovirus type 7, Epstein-Barr Virus (EBV), Cytomegalovirus (CMV), Herpes simplex virus (HSV), Measles virus
Influenza Virus
- Family: Orthomyxoviridae
- Spherical or filamentous viruses
- Single-stranded, segmented RNA genome
- Three serotypes (types A, B, and C) differentiated by internal and matrix proteins
- Hemagglutinin (HA) and neuraminidase (NA) are surface glycoproteins on the virus envelope.
- Antigenic drift: minor changes in HA or NA proteins resulting in epidemics.
- Antigenic shift: major changes in HA or NA proteins resulting in pandemics due to gene reassortment.
Viral Pneumonia: Clinical features
- Incubation period: 3-4 days
- Symptoms: fever, myalgia, sore throat, nonproductive cough, headache
- Complications: pulmonary (secondary bacterial infection), non-pulmonary (myositis, encephalitis, peripheral nervous system complications like Guillain-Barré syndrome, Reye's syndrome).
Viral Pneumonia: Lab diagnosis
- Demonstration of virus antigen (RT-PCR, immunofluorescence).
- Isolation of the virus (monkey kidney cells).
- Serology (hemagglutination inhibition, complement fixation test, ELISA).
Viral Pneumonia: Treatment
- Antivirals (Amantadine, Rimantidine, Oseltamivir, zanamivir)
Viral Pneumonia: Prophylaxis
- Inactivated vaccines, inactivated subunit vaccines, recombinant vaccines, live attenuated vaccines
Coronaviruses
- Large family of viruses causing illness in humans and animals.
- Coronaviruses belong to the family Coronaviridae.
- Crown-like spikes on the outer surface.
- Enveloped, positive-sense, single-stranded RNA viruses with a helical nucleocapsid.
- Common cause of the common cold.
- Incubation period: 2-14 days
- Mortality: 11% especially for elderly individuals.
- SARS-CoV, MERS-CoV, SARS-CoV-2 (COVID-19) are important strains.
Severe Acute Respiratory Syndrome (SARS)
- Caused by a coronavirus.
- First outbreak in southern China in 2002.
- Pandemic in 2003 affecting 30 countries with over 800 deaths.
- Flu-like symptoms (fever, chills, dry cough, shortness of breath, muscle aches, diarrhea).
- Complication: pneumonia, respiratory failure, heart and liver failure.
SARS Lab diagnosis
- PCR (sputum, blood, stool), detection of serum antibodies.
SARS Treatment
- Respiratory support, ribavirin, interferons, high-dose steroids (controversial) - no vaccine.
Middle East Respiratory Syndrome Coronavirus (MERS-CoV)
- First cases in Jordan and Saudi Arabia in 2012
- People with comorbidities (diabetes, cancer, weakened immune systems, chronic lung, heart, or kidney disease) are more likely to be infected or experience severe disease
- Primarily transmitted through close contact with ill individuals.
- Incubation period: 5-6 days, range of 2-14 days.
- Symptoms: fever, cough, shortness of breath, gastrointestinal symptoms (diarrhea, nausea, vomiting).
- Complications: pneumonia, kidney failure.
MERS-CoV Lab diagnosis
- Respiratory specimens, serum.
- Serologic testing, antibody detection, real-time RT-PCR testing
MERS-CoV Treatment
- No vaccine. No specific antiviral treatment. Supportive management is crucial.
SARS-CoV-2 (COVID-19)
- Infectious disease caused by a coronavirus closely related to SARS-CoV.
- Primarily spread through respiratory droplets from infected individuals.
- ACE-2 is a functional receptor for SARS-CoV-2 and is highly expressed in pulmonary epithelial cells.
- Incubation period: 2-14 days.
- Symptoms: fever, cough, shortness of breath; diarrhea or upper respiratory symptoms are less frequent
- Potential complications: pneumonia, multi-organ failure.
COVID-19 Diagnosis
- Molecular tests (RT-PCR), Serology, Blood tests, Chest X-ray
COVID-19 Treatment
- Antiviral drugs (Lopinavir, Ribavirin, interferon beta-1b), corticosteroids (dexamethasone, prednisolone), Immunomodulator (tocilizumab)
COVID-19 Prevention
- Wear facemasks
- Cover coughs/sneezes
- Frequent handwashing
- Social distancing
- Quarantine
Fungal Pneumonia
Fungal Pneumonia: Introduction
- Fungal pneumonia is a lung infection caused by either primary pathogenic or opportunistic fungi.
- Pathogenic fungi can infect both healthy and immunocompromised individuals.
- Mortality can be very high (90%) in immunocompromised patients, while normal immune systems often respond well to antiviral therapy.
Fungal Pneumonia: Transmission
- Inhalation of fungal spores is the typical method of transmission.
- Pathogenic examples include: Histoplasma capsulatum (histoplasmosis), Coccidioides immitis (coccidioidomycosis), Blastomyces dermatitidis (blastomycosis), Paracoccidioides brasiliensis (paracoccidioidomycosis) - all thermally dimorphic fungi.
- Fungal infections are geographically specific (e.g., Histoplasmosis, Coccidioidomycosis).
Fungal Pneumonia: Histoplasmosis
- Caused by Histoplasma capsulatum.
- Often associated with the Ohio river valley.
- Dimorphic (yeast form and mycelial form depending on temperature).
- Typically a mild, self-limiting disease, but can be severe in immunocompromised individuals.
Fungal Pneumonia: Coccidioidomycosis
- Caused by Coccidioides immitis.
- Endemic to Southwestern U.S. and northern Mexico.
- Distinctive morphology (block-like arthrospores, spherules containing endospores in the lungs).
- Lung infection is common, but dissemination to the central nervous system (meningitis) can occur.
Fungal Pneumonia: Blastomycosis
- Caused by Blastomyces dermatitidis.
- Native to North America.
- Generally occurs in pulmonary form, but can cause skin or bone infections.
- Dimorphic characteristic.
Fungal Pneumonia: Paracoccidioidomycosis
- Caused by Paracoccidioides brasiliensis.
- Found in Central and South America.
- Lung infection followed by lesions and other problems and is typically restricted to the mucosa of the mouth and nose.
Fungal Pneumonia: Opportunistic Fungi
- Pneumonia caused by opportunistic fungi is rising due to immunosuppressive drugs after organ transplant, cytotoxic drugs in cancer therapy, and a proliferation of AIDS patients globally.
- Includes Candida albicans (oral thrush, systemic candidiasis), Aspergillus species (aspergillosis, fungus ball), Cryptococcus neoformans (cryptococcosis), Pneumocystis jiroveci (pneumonia).
Fungal Pneumonia: Diagnosis and Treatment
- Diagnosis: microscopic examination of sputum (silver staining), Bronchoalveolar lavage (BAL), cultures (Sabouraud dextrose agar), molecular methods (PCR), serologic testing (ELISA), skin testing
- Treatment: depends on the causative agent (e.g., antifungals like amphotericin B, fluconazole).
Prevention of Viral and Fungal Pneumonia
- Handwashing, covering coughs/sneezes, quarantining
- Avoid touching eyes, nose, and mouth with unwashed hands.
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