Podcast
Questions and Answers
A receptor has an alteration that causes it to constitutively bind GTP. Which subunit of the G-protein is most likely affected?
A receptor has an alteration that causes it to constitutively bind GTP. Which subunit of the G-protein is most likely affected?
- GDP
- Beta
- Alpha (correct)
- Gamma
A cell has a mutation that causes irreversible activation of adenylyl cyclase. What immediate downstream effect would be observed?
A cell has a mutation that causes irreversible activation of adenylyl cyclase. What immediate downstream effect would be observed?
- Hydrolysis of GTP bound to the alpha subunit
- Activation of phospholipase C
- Decreased levels of cAMP
- Increased production of cAMP (correct)
In a G-coupled receptor signaling pathway, if protein kinase A (PKA) is not activated, which of the following upstream events is most likely to be inhibited?
In a G-coupled receptor signaling pathway, if protein kinase A (PKA) is not activated, which of the following upstream events is most likely to be inhibited?
- DAG production
- Calcium release
- cAMP production (correct)
- Receptor activation
A researcher is studying a G-protein coupled receptor pathway. They notice that CREB is not being phosphorylated. Which step would most directly lead to this observation?
A researcher is studying a G-protein coupled receptor pathway. They notice that CREB is not being phosphorylated. Which step would most directly lead to this observation?
A patient is diagnosed with Alport syndrome involving altered type IV collagen. Which of the following cellular processes is most likely affected?
A patient is diagnosed with Alport syndrome involving altered type IV collagen. Which of the following cellular processes is most likely affected?
A patient with Menkes disease exhibits reduced copper absorption. Which of the following subsequent conditions is most likely to arise?
A patient with Menkes disease exhibits reduced copper absorption. Which of the following subsequent conditions is most likely to arise?
In Wilson's disease, toxic build-up of copper in tissues occurs. Which process is disrupted that leads to this outcome?
In Wilson's disease, toxic build-up of copper in tissues occurs. Which process is disrupted that leads to this outcome?
A patient presents with symptoms of hemolytic anemia due to altered hemoglobin. Which disorder is most likely associated with these symptoms?
A patient presents with symptoms of hemolytic anemia due to altered hemoglobin. Which disorder is most likely associated with these symptoms?
What enzymatic activity directly incorporates iron into protoporphyrin IX during heme synthesis?
What enzymatic activity directly incorporates iron into protoporphyrin IX during heme synthesis?
Which of the following is a key substrate required for the initial step of heme synthesis?
Which of the following is a key substrate required for the initial step of heme synthesis?
During heme synthesis, decarboxylation reactions are essential. After which transformation do those decarboxylation reaction occur?
During heme synthesis, decarboxylation reactions are essential. After which transformation do those decarboxylation reaction occur?
Heme biosynthesis is tightly regulated. Under normal physiological conditions, where does the primary regulation of heme synthesis occur?
Heme biosynthesis is tightly regulated. Under normal physiological conditions, where does the primary regulation of heme synthesis occur?
Which function is associated with calcium ions ($Ca^{2+}$) in cellular processes?
Which function is associated with calcium ions ($Ca^{2+}$) in cellular processes?
Superoxide dismutases are a class of enzymes that require a specific ion for activation. Which ion fulfills this role?
Superoxide dismutases are a class of enzymes that require a specific ion for activation. Which ion fulfills this role?
The transport of glucose into cells via SGLT1 transporters is indirectly linked to the movement of a specific ion. Which ion is this interaction associated with?
The transport of glucose into cells via SGLT1 transporters is indirectly linked to the movement of a specific ion. Which ion is this interaction associated with?
Which ion is capable of generating hydroxyl radicals ($HO \cdot$) when it reacts with hydrogen peroxide ($H_2O_2$)?
Which ion is capable of generating hydroxyl radicals ($HO \cdot$) when it reacts with hydrogen peroxide ($H_2O_2$)?
Which of the listed enzymes are directly involved in the production of NADPH within the pentose phosphate pathway?
Which of the listed enzymes are directly involved in the production of NADPH within the pentose phosphate pathway?
A researcher inhibits transketolase and transaldolase in cells undergoing the pentose phosphate pathway. What is the most direct consequence?
A researcher inhibits transketolase and transaldolase in cells undergoing the pentose phosphate pathway. What is the most direct consequence?
The pentose phosphate pathway is considered irreversible at certain enzymatic steps. Which action causes this irreversibility?
The pentose phosphate pathway is considered irreversible at certain enzymatic steps. Which action causes this irreversibility?
Considering the main functions of the pentose phosphate pathway, in which cellular location would you expect this pathway to be most active?
Considering the main functions of the pentose phosphate pathway, in which cellular location would you expect this pathway to be most active?
How does an increase in the proportion of unsaturated phospholipids typically affect membrane fluidity at a constant temperature?
How does an increase in the proportion of unsaturated phospholipids typically affect membrane fluidity at a constant temperature?
A cell increases the amount of cholesterol in its membrane. How would this change affect the stabilization of cellular integrity?
A cell increases the amount of cholesterol in its membrane. How would this change affect the stabilization of cellular integrity?
What is the primary mechanism by which ionophores facilitate ion movement across cellular membranes?
What is the primary mechanism by which ionophores facilitate ion movement across cellular membranes?
What is the primary purpose of establishing and maintaining concentration gradients across a semipermeable membrane in cells?
What is the primary purpose of establishing and maintaining concentration gradients across a semipermeable membrane in cells?
What is the most direct mechanism by which cells can increase signaling intensity at the cellular membrane?
What is the most direct mechanism by which cells can increase signaling intensity at the cellular membrane?
Which type of transport is characterized by its ability to move molecules against their electrochemical gradient?
Which type of transport is characterized by its ability to move molecules against their electrochemical gradient?
Which property is specific only to simple diffusion when compared to facilitated diffusion and active transport?
Which property is specific only to simple diffusion when compared to facilitated diffusion and active transport?
What primarily determines the rate of facilitated diffusion across a cell membrane?
What primarily determines the rate of facilitated diffusion across a cell membrane?
Which of the following molecules has the highest affinity for oxygen?
Which of the following molecules has the highest affinity for oxygen?
Under anaerobic conditions with energy needs in the muscle tissue, what change would occur to the oxygen affinity of myoglobin?
Under anaerobic conditions with energy needs in the muscle tissue, what change would occur to the oxygen affinity of myoglobin?
Which combination of conditions would most effectively decrease the oxygen affinity of hemoglobin?
Which combination of conditions would most effectively decrease the oxygen affinity of hemoglobin?
Which of the following is a characteristic unique to primary active transport?
Which of the following is a characteristic unique to primary active transport?
P-ATPases are a group of ATP-driven pumps involved in ion transport. What distinguishes P-ATPases from other types of ATPases?
P-ATPases are a group of ATP-driven pumps involved in ion transport. What distinguishes P-ATPases from other types of ATPases?
ABC transporters are implicated in multidrug resistance in cancer cells. What is the primary function disrupted when these transporters malfunction?
ABC transporters are implicated in multidrug resistance in cancer cells. What is the primary function disrupted when these transporters malfunction?
Which structural feature is most critical for the stability of the collagen alpha helix?
Which structural feature is most critical for the stability of the collagen alpha helix?
What role do proline residues play in protein structure?
What role do proline residues play in protein structure?
Which amino acids are most likely involved in post-translational modification by phosphorylation?
Which amino acids are most likely involved in post-translational modification by phosphorylation?
Which enzyme initiates the ubiquitination process by binding to and activating ubiquitin?
Which enzyme initiates the ubiquitination process by binding to and activating ubiquitin?
During ubiquitination, which enzyme is responsible for transferring ubiquitin from the E2 enzyme to the target protein?
During ubiquitination, which enzyme is responsible for transferring ubiquitin from the E2 enzyme to the target protein?
What is the role of deubiquitylating enzymes (DUBs) in the ubiquitin-proteasome system?
What is the role of deubiquitylating enzymes (DUBs) in the ubiquitin-proteasome system?
For a protein to be degraded by the proteasome, what event is essential for the proteasome to interact and cleave?
For a protein to be degraded by the proteasome, what event is essential for the proteasome to interact and cleave?
A patient presents with symptoms of glucose-galactose malabsorption. Which of the following processes is most likely affected?
A patient presents with symptoms of glucose-galactose malabsorption. Which of the following processes is most likely affected?
A patient with Duchenne muscular dystrophy has impaired muscle function. Which alteration is most likely associated with this condition?
A patient with Duchenne muscular dystrophy has impaired muscle function. Which alteration is most likely associated with this condition?
A patient presents with reactive oxygen species that impact the endothelium and reperfusion with inflammation. Which condition causes this presentation?
A patient presents with reactive oxygen species that impact the endothelium and reperfusion with inflammation. Which condition causes this presentation?
A patient is diagnosed with Bullous Pemphigoid and has had an increase of cAMP. Which alteration would be most directly related?
A patient is diagnosed with Bullous Pemphigoid and has had an increase of cAMP. Which alteration would be most directly related?
Flashcards
GTP Binding Receptor
GTP Binding Receptor
A receptor alteration that constitutively binds GTP, affecting the alpha subunit.
Downstream Consequence
Downstream Consequence
Adenylate cyclase change; leading to irreversible consequences downstream due to continuous activation
G-coupled Receptor Signaling
G-coupled Receptor Signaling
CREB; transcription factors that can be altered by the activation of PKA, PKC, etc.
Ferrochelatase Activity
Ferrochelatase Activity
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5-ALA synthase
5-ALA synthase
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Porphobilinogen synthase
Porphobilinogen synthase
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Key substrates of Porphyrin Synthesis
Key substrates of Porphyrin Synthesis
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Key Steps in Heme Synthesis
Key Steps in Heme Synthesis
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Regulation of Heme Synthesis
Regulation of Heme Synthesis
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Calcium's Role
Calcium's Role
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Role of Iron
Role of Iron
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Role of Sodium
Role of Sodium
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Role of Zinc
Role of Zinc
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Role of Copper
Role of Copper
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Enzymes for NADPH
Enzymes for NADPH
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Why Pentose Phosphate?
Why Pentose Phosphate?
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More Unsaturated Phospholipids
More Unsaturated Phospholipids
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Ionophore Function
Ionophore Function
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Concentration Gradients
Concentration Gradients
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Diffusion
Diffusion
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Active Transport
Active Transport
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Oxygen Affinity?
Oxygen Affinity?
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Decrease Myoglobin Affinity
Decrease Myoglobin Affinity
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Decrease Hemoglobin Affinity
Decrease Hemoglobin Affinity
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Active Transport
Active Transport
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Secondary Active Transport
Secondary Active Transport
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Amino Acids - Lysines
Amino Acids - Lysines
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Amino Acids - Valines
Amino Acids - Valines
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Amino Acids - Prolines
Amino Acids - Prolines
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Amino Acids - Glycines
Amino Acids - Glycines
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Amino Acids - Cysteines
Amino Acids - Cysteines
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Amino Acids - Ser, Thr & Tyr
Amino Acids - Ser, Thr & Tyr
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Function of E1
Function of E1
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Function of E2
Function of E2
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Function of E3
Function of E3
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Function of DUB
Function of DUB
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Nitric Oxide Synthesis
Nitric Oxide Synthesis
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Reactive Nitrogen Importance
Reactive Nitrogen Importance
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Reperfusion Issue
Reperfusion Issue
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Study Notes
G-Coupled Receptor Signaling
- A receptor alteration that constitutively binds GTP affects the alpha subunit.
- The immediate downstream consequence is a change in Adenylate cyclase that is irreversible.
- The final downstream component of G-coupled receptor signaling is CREB Transcription.
- If CREB transcription activation following receptor activation is not activated, possible alterations include:
- PKC: DAG or Calcium release
- PKA: cAMP
- Alpha subunit: Receptor activation
- CREB: Failure to translocate active subunit or PKA to nucleus; failure to phosphorylate CREB, or activate PKA.
Big Picture Clinical Connections
- Alport Syndrome involves altered type IV collagen which increases sensitivity to proteolytic enzymes.
- Beta-Thalassemia involves altered hemoglobin and increased probability of hemolytic anemia.
- Ehler's-Danlos Syndrome involves impaired collagen function and unstable collagen with hypermotility
- Menkes disease involves reduced copper absorption by the liver.
- Muscular Dystrophy involves impaired association of laminins and collagen.
- Parkinson's Disease has toxic build-up of copper.
- Wilson's Disease involves lipid metabolism and elevated sphingomyelin.
Heme Synthesis
- The final step to generate functional heme involves ferrochelatase activity and iron incorporation.
- Enzymes involved are synthase and synthase.
- 5-ALA synthase makes 5-ALA
- Key substrates are Succinyl CoA and Glycine
- Decarboxylation is seen after ring formation in both the cytosol and during transition into the mitochondrion.
- Common regulation points affect the activity of 5-ALA synthase; heme suppresses its activity
Wonderful World of Ions
- Diffussion to the cytoplasm is correlated with activation of NOS for Calcium.
- Diffusion to the cytoplasm via SGLT1 is correlated with glucose symport activity for Potassium.
- Copper is pumped into cells from outside via an anti-port pump system requiring energy.
- Iron is required for activation of some superoxide dismutases.
- Sodium binds oxygen in heme.
- Zinc is capable of generating a hydroxyl radical when reacting with hydrogen peroxide.
Pentose Phosphate Pathway
- Necessary enzymes for NADPH production include 6-phosphogluconate dehydrogenase.
- The step where Ribulose 5-phosphate is generated is considered irreversible.
- Because energetics favor progression over reversal the reversible enzymes are considered bidirectional.
- It should be expected that cells needing energy and necessary sugars for glycolysis use this pathway.
Causes and Consequences Membrane Edition
- More Cholesterol decreases fluidity.
- Less Cholesterol increases fluidity.
- More unsaturated phospholipids increase fluidity.
- More saturated phospholipids decrease fluidity.
- Changes in fluidity can increase or decrease stabilization; however stabilization is about cellular integrity not membrane integrity
Pumps, Channels, and more
- Ionophores are chemicals which spontaneously associate with membranes and act in both facilitated diffusion and increase ion movement across membranes, essentially creating a channel and/or pore.
- Concentration gradients across a semipermeable membrane creates a gradient so ions can naturally diffuse and bring material to the desired location via symport activity and enable natural diffusion through channels or proteins that can carry out enzymatic activity.
- Ways to increase signaling intensity or the probability are, the organization of receptors in lipid rafts which ensure membrane movement of the raft to the proper location and enable organization in lipid rafts to enhance dimerization; receptor activation.
Kinetics And Transport
- Diffusion is used only for very specific molecules, including O2 and CO2.
- Facilitated diffusion can mobilize other molecules without direct energy input and rate can be increased/decreased directly due to ion concentration and rate is also determined by capabilities of the transporter.
- Active transport works against ion electrochemical gradient, requires energy, and the rate is determined by energy availability and transporter capabilities.
Oxygen Affinity
- Myoglobin has a higher affinity for oxygen.
- Anerobic conditions with energy needs and increased lactic acid production; low O2 levels decreases oxygen for myoglobin
- Low pH, increased/high hydrogen; increased/high CO2; increased/high 2,3-BPG decreases oxygen affinity for hemoglobin.
- Changing all of the above decreases oxygen affinity most efficiently because the effects on oxygen affinity are additive
Active Transport
- Requires energy either as a result of high energy bonds like ATP or as a coupling result of electrochemical gradients
- ATPases are pumps that use ATP in order to drive ion movement
- F-ATPase is a coupling factor.
- V-type is vacuolar.
- P-ATPases are phosphorylated intermediates.
- Some active transport includes ATP-binding cassette(ABC) transporters which play a role in multi-drug resistance in cancer when overexpressed and when malfuntions are associate with dsieases such cystic fibrosis.
Amino Acids and More...
- Lysines are involved in collagen and elastin crosslinking.
- Valines have weak hydrophobic interactions allowing for flexibility in elastin.
- Prolines provide bends, especially in collagen.
- Glycines is necessary for collagen alpha helix stability.
- Cysteines have sulfhydryl groups, disulfide bonds, likely important in laminins.
- Tyrosines, Serine and Threonines undergo phosphorylation.
Protein Degradation And Proteolysis
- E1 activates an enzyme and initiates the entire process.
- E2 Ubiquitin Enzyme with hold the Ubiquitin for attachment to the target.
- E3 is the ligase that delivers/targets ubiquitin from E2 to the target.
- DUB is a deubiquitylating enzyme which removes Ubiquitin for reuse before degradation.
- Regulatory particle function is recognition of the ubiquitylated target and denaturation of folded proteins so it and can be cleaved properly and proteases degrade the denatured proteins
Big Picture Clinical Connections 2
- Glucose-galactose malabsorption involves alteration to SGLT-1 and the ability of intestinal epithelial cells to absorb glucose.
- Diabetes and vascular injury changes glycine of collagen and correlated increases risk with high fracture rate.
- Unstable hemoglobin causes potential jaundice and pigmented urine.
- Osteogenesis Imperfecta is correlated with changes in glycine pf collagen and correlated increases risk with high fracture rate
- Duchenne is correlated with impaired association of due to dystrophin.
- Proteus syndrome is due to overgrowth from acquired mutations in AKT.
- Sickle Cell Anemia involves altered hemoglobin with altered cellular shape.
Reactive Oxygen SPECIES
- Superoxide, hydrogen peroxide and hydroxyl radical are the 3 ROS
- Haber Weiss and Fenton, and metal-catalyzed Haber Weiss are the reactions providing the hydroxyl radical.
- Superoxide and hydrogen peroxide are both are common precursors to the hydroxyl radical.
Big Picture Connections 3
- Pertussis toxin increases cAMP levels due to increased activity; stimulation of adenylate Cyclase.
- Cholera toxin increases cAMP levels to due to loss of activity of alpha subunits.
- Loss of fatty acid synthase activity aids the prevention of progression into S phase.
- Marfan Syndrome Fibrillin has alterations decreasing integrity elastins.
- Bullous Pemphigoid disrupts hemidesmosomes as a result of disruption of hemidesmosomes and blistering are common
- Junctional epidermolysis bullosa is associated laminin and scarring.
Ions and Channels
-
When pump is inactive:
- The Potassium is in cytoplasm
- The Sodium is ECM/Outside Cell
- The Calcium is in cytoplasm
-
Once pump is active:
- The Potassium is in ECM/Outside Cell
- The Sodium is in Cytoplasm
- The Calcium is in ECM/Outside Cell
- The newly pumped sodium can drive glucose with them
Cellular Regulation
- Hyperphosphorylation Rb
- Activation of E2F dependent transcription
- Increased activity of CDK2/increased kinase activity to drive toward S
- Fatty acids synthase activity/fatty acid synthesis
Reactive Oxygen Species Again
- Reactive nitrogen species includes nitric oxide produced directly by nitric oxide synthase.
- Reactive nitrogen species are important for inflammation, pagocytosis, immune response.
- Reperfusion after an ischemic event is a problem because it causes an influx that production (ROS causes).
- Reperfusion promotes inflammation and creates vicious cycle of damage
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